View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_51 (Length: 383)
Name: NF0830_high_51
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_51 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 5571678 - 5571852
Alignment:
| Q |
36 |
cagataatcaaaaccaagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaataaattctgctatatcctcaac |
135 |
Q |
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|||||| ||||||||| ||||||||||||| ||||||| |||||||| ||| || |||||| ||||| |||||| |||| ||| || |||||||| ||| |
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| T |
5571678 |
cagatagtcaaaacca-gtaccctgcacaagcacaaataaaaagtgacacttcttttacacttccaatgccagactaatatattatgttatatccttaac |
5571776 |
T |
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| Q |
136 |
catgatttgttttatgtagtagcaacagggattgcatgtatttcaatgagactcagaactctaaccatatttatac |
211 |
Q |
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| T |
5571777 |
cataatttgtttaatgtagtagcaaccgggattgcatatctttcaatgagactcggaactctaaccatatttatac |
5571852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 5570227 - 5570265
Alignment:
| Q |
337 |
caacaaattctcatcactatttttcagctcattcatctc |
375 |
Q |
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| T |
5570227 |
caacaaattctcatcactatttttcagctcattcatctc |
5570265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 5579521 - 5579576
Alignment:
| Q |
319 |
tatgccataaaacttgctcaacaaattctcatcactatttttcagctcattcatctc |
375 |
Q |
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| T |
5579521 |
tatgccagaaaacatgtgcaacaatttctcatcact-tttttcagctcattcatctc |
5579576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 29877950 - 29877848
Alignment:
| Q |
36 |
cagataatcaaaaccaagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaataaattctgctatatcctcaac |
135 |
Q |
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|||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||| || |
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| T |
29877950 |
cagataatcaaaactaagtaccctgcacaagcaaaagtagaaagtgacccttgttctacacttccaataccaaacaaataaattatgttatatcctctac |
29877851 |
T |
|
| Q |
136 |
cat |
138 |
Q |
| |
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||| |
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|
| T |
29877850 |
cat |
29877848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 24259408 - 24259509
Alignment:
| Q |
37 |
agataatcaaaaccaagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaataaattctgctatatcctcaacc |
136 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||| | ||||||| ||||| || |||| |||||||| |
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| T |
24259408 |
agataatcgaaaccaagtacccagcacaagcacaaatagaaagtgaaccttgttctacacttccaatgcaagacaaagaaattatgttatagcctcaacc |
24259507 |
T |
|
| Q |
137 |
at |
138 |
Q |
| |
|
|| |
|
|
| T |
24259508 |
at |
24259509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 806870 - 806792
Alignment:
| Q |
36 |
cagataatcaaaaccaagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaata |
115 |
Q |
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|||||| ||||||||| ||||||||||||| ||||||| |||||||| ||| || |||||| |||||||||||| |||| |
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| T |
806870 |
cagatagtcaaaacca-gtaccctgcacaagcacaaataaaaagtgacacttcttttacacttccaataccagactaata |
806792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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