View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_high_52 (Length: 381)

Name: NF0830_high_52
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_high_52
NF0830_high_52
[»] chr2 (14 HSPs)
chr2 (279-352)||(40897224-40897297)
chr2 (193-258)||(40897291-40897356)
chr2 (48-197)||(40897612-40897760)
chr2 (1-33)||(6750120-6750152)
chr2 (1-33)||(34983288-34983320)
chr2 (1-33)||(38527186-38527218)
chr2 (2-33)||(13616077-13616108)
chr2 (1-32)||(28745609-28745640)
chr2 (1-32)||(36436297-36436328)
chr2 (1-33)||(2249593-2249625)
chr2 (1-33)||(22674854-22674886)
chr2 (4-32)||(23869678-23869706)
chr2 (1-33)||(38763726-38763758)
chr2 (1-33)||(42473573-42473605)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-33)||(19058-19090)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-33)||(64946-64978)
[»] chr8 (8 HSPs)
chr8 (1-33)||(9830620-9830652)
chr8 (1-33)||(34934370-34934402)
chr8 (2-33)||(6316890-6316921)
chr8 (1-29)||(1183835-1183863)
chr8 (1-33)||(4231233-4231265)
chr8 (5-33)||(5590288-5590316)
chr8 (1-29)||(24797172-24797200)
chr8 (1-33)||(41838069-41838101)
[»] chr7 (5 HSPs)
chr7 (1-33)||(26873715-26873747)
chr7 (1-33)||(44724177-44724209)
chr7 (1-32)||(17166878-17166909)
chr7 (165-197)||(31931855-31931887)
chr7 (1-29)||(36675605-36675633)
[»] chr5 (12 HSPs)
chr5 (1-33)||(3631271-3631303)
chr5 (1-33)||(9737820-9737852)
chr5 (1-33)||(13013368-13013400)
chr5 (1-33)||(26525343-26525375)
chr5 (1-31)||(8074355-8074385)
chr5 (1-31)||(29390281-29390311)
chr5 (1-33)||(6229072-6229104)
chr5 (1-29)||(16823143-16823171)
chr5 (1-29)||(25701538-25701566)
chr5 (5-33)||(28662133-28662161)
chr5 (1-33)||(43348646-43348678)
chr5 (1-33)||(43358422-43358454)
[»] chr4 (14 HSPs)
chr4 (1-33)||(2655024-2655056)
chr4 (1-33)||(6755841-6755873)
chr4 (1-33)||(36584436-36584468)
chr4 (1-33)||(40228545-40228577)
chr4 (1-33)||(44817663-44817695)
chr4 (1-33)||(51001488-51001520)
chr4 (1-30)||(18491199-18491228)
chr4 (1-30)||(19653761-19653790)
chr4 (1-33)||(11651080-11651112)
chr4 (1-33)||(13233242-13233274)
chr4 (1-33)||(27270366-27270398)
chr4 (1-33)||(31664277-31664309)
chr4 (1-33)||(38141672-38141704)
chr4 (1-33)||(44134506-44134538)
[»] chr3 (11 HSPs)
chr3 (1-33)||(16908923-16908955)
chr3 (1-33)||(18163730-18163762)
chr3 (1-33)||(29126158-29126190)
chr3 (1-33)||(50527748-50527780)
chr3 (1-33)||(52571539-52571571)
chr3 (2-33)||(7160405-7160436)
chr3 (1-33)||(1092992-1093024)
chr3 (1-33)||(12251622-12251654)
chr3 (3-31)||(13594990-13595018)
chr3 (5-33)||(22729236-22729264)
chr3 (1-33)||(52201994-52202026)
[»] chr1 (11 HSPs)
chr1 (1-33)||(6849765-6849797)
chr1 (1-33)||(8530095-8530127)
chr1 (1-33)||(16693062-16693094)
chr1 (1-33)||(17285407-17285439)
chr1 (1-33)||(33012170-33012202)
chr1 (1-29)||(919827-919855)
chr1 (1-33)||(17879974-17880006)
chr1 (1-33)||(29169954-29169986)
chr1 (1-29)||(29981824-29981852)
chr1 (1-33)||(37125705-37125737)
chr1 (1-33)||(44052572-44052604)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-32)||(11179-11210)
[»] chr6 (3 HSPs)
chr6 (1-33)||(12698506-12698538)
chr6 (1-33)||(24130353-24130385)
chr6 (1-29)||(24635588-24635616)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 279 - 352
Target Start/End: Complemental strand, 40897297 - 40897224
Alignment:
Q  279 tgttgtgttactattctatcttttgagagaagttttccaaaattgaaattatgaaagttttttctatcaaatat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40897297 tgttgtgttactattctatcttttgagagaagttttccaaaattgaaattatgaaagttttttctatcaaatat 40897224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 40897356 - 40897291
Alignment:
Q  193 attttaacctgtaattacgtttctaacacacacgcataacttgcataatgttaacaatttgttgtg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40897356 attttaacctgtaattacgtttctaacacacacgcataacttgcataatgttaacaatatgttgtg 40897291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 40897760 - 40897612
Alignment:
Q  48 ttagcgagtataagtttatttcgcaagattttaaacaattttgtgatgnnnnnnnnngttttcggcacatcaaaatct-tgtaaagtgatgtagtggccc 146  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||| |||||||||||||| ||||||    
T  40897760 ttagcgattataggtttatttcgcgagattttaaacaattttgtgatg--tttttttgttttcggcacatcaaaatctctgtaaagtgatgtaatggccc 40897663  T
Q  147 atccnnnnnnnnnnnntcatagatctaatttatgagattttaaacaatttt 197  Q
    ||||            ||||||||||| ||| |||||||||||||||||||    
T  40897662 atccaaaaataaaaaatcatagatctattttgtgagattttaaacaatttt 40897612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6750152 - 6750120
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  6750152 cttcatgggctggggtgggccacggcccacccg 6750120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34983288 - 34983320
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  34983288 cttcatgggctggggtgggccacggcccacccg 34983320  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38527186 - 38527218
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  38527186 cttcatgggctggggtgggccacggcccacccg 38527218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 13616108 - 13616077
Alignment:
Q  2 ttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||||||||||||||||    
T  13616108 ttcatgggctggggtgggccacggcccacccg 13616077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 28745640 - 28745609
Alignment:
Q  1 cttcatgggctggggtgggccacggcccaccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  28745640 cttcatgggctggggtgggccacggcccaccc 28745609  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 36436328 - 36436297
Alignment:
Q  1 cttcatgggctggggtgggccacggcccaccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  36436328 cttcatgggctggggtgggccacggcccaccc 36436297  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2249593 - 2249625
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2249593 cttcatgggctggggtgggccacgacccacccg 2249625  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22674886 - 22674854
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||| ||||||||||||||    
T  22674886 cttcatgggctggggtggaccacggcccacccg 22674854  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 23869678 - 23869706
Alignment:
Q  4 catgggctggggtgggccacggcccaccc 32  Q
    |||||||||||||||||||||||||||||    
T  23869678 catgggctggggtgggccacggcccaccc 23869706  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38763726 - 38763758
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||| ||||||||||||||||||||    
T  38763726 cttcatgggctgaggtgggccacggcccacccg 38763758  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42473573 - 42473605
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||| ||||||    
T  42473573 cttcatgggctggggtgggccacggctcacccg 42473605  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19058 - 19090
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  19058 cttcatgggctggggtgggccacggcccacccg 19090  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 64946 - 64978
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  64946 cttcatgggctggggtgggccacggcccacccg 64978  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9830620 - 9830652
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  9830620 cttcatgggctggggtgggccacggcccacccg 9830652  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34934402 - 34934370
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  34934402 cttcatgggctggggtgggccacggcccacccg 34934370  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 6316890 - 6316921
Alignment:
Q  2 ttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||||||||||||||||    
T  6316890 ttcatgggctggggtgggccacggcccacccg 6316921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1183835 - 1183863
Alignment:
Q  1 cttcatgggctggggtgggccacggccca 29  Q
    |||||||||||||||||||||||||||||    
T  1183835 cttcatgggctggggtgggccacggccca 1183863  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4231233 - 4231265
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||| |||||||||||||||||||||    
T  4231233 cttcatgggctagggtgggccacggcccacccg 4231265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 5590316 - 5590288
Alignment:
Q  5 atgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||    
T  5590316 atgggctggggtgggccacggcccacccg 5590288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24797200 - 24797172
Alignment:
Q  1 cttcatgggctggggtgggccacggccca 29  Q
    |||||||||||||||||||||||||||||    
T  24797200 cttcatgggctggggtgggccacggccca 24797172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41838101 - 41838069
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||| ||||    
T  41838101 cttcatgggctggggtgggccacggcccgcccg 41838069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26873715 - 26873747
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  26873715 cttcatgggctggggtgggccacggcccacccg 26873747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44724209 - 44724177
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  44724209 cttcatgggctggggtgggccacggcccacccg 44724177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 17166878 - 17166909
Alignment:
Q  1 cttcatgggctggggtgggccacggcccaccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  17166878 cttcatgggctggggtgggccacggcccaccc 17166909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 31931887 - 31931855
Alignment:
Q  165 atagatctaatttatgagattttaaacaatttt 197  Q
    |||||||||||||| ||||||||||||||||||    
T  31931887 atagatctaatttacgagattttaaacaatttt 31931855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36675633 - 36675605
Alignment:
Q  1 cttcatgggctggggtgggccacggccca 29  Q
    |||||||||||||||||||||||||||||    
T  36675633 cttcatgggctggggtgggccacggccca 36675605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3631271 - 3631303
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  3631271 cttcatgggctggggtgggccacggcccacccg 3631303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9737852 - 9737820
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  9737852 cttcatgggctggggtgggccacggcccacccg 9737820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13013400 - 13013368
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  13013400 cttcatgggctggggtgggccacggcccacccg 13013368  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26525375 - 26525343
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  26525375 cttcatgggctggggtgggccacggcccacccg 26525343  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8074385 - 8074355
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacc 31  Q
    |||||||||||||||||||||||||||||||    
T  8074385 cttcatgggctggggtgggccacggcccacc 8074355  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 29390281 - 29390311
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacc 31  Q
    |||||||||||||||||||||||||||||||    
T  29390281 cttcatgggctggggtgggccacggcccacc 29390311  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6229104 - 6229072
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||||||| |||||||||    
T  6229104 cttcatgggctggggtgggccacagcccacccg 6229072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 16823143 - 16823171
Alignment:
Q  1 cttcatgggctggggtgggccacggccca 29  Q
    |||||||||||||||||||||||||||||    
T  16823143 cttcatgggctggggtgggccacggccca 16823171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25701566 - 25701538
Alignment:
Q  1 cttcatgggctggggtgggccacggccca 29  Q
    |||||||||||||||||||||||||||||    
T  25701566 cttcatgggctggggtgggccacggccca 25701538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 28662133 - 28662161
Alignment:
Q  5 atgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||    
T  28662133 atgggctggggtgggccacggcccacccg 28662161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43348646 - 43348678
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||| |||||||||||||||||    
T  43348646 cttcatgggctggggcgggccacggcccacccg 43348678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43358422 - 43358454
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||| ||||||||||||||||||||    
T  43358422 cttcatgggctgaggtgggccacggcccacccg 43358454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2655056 - 2655024
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  2655056 cttcatgggctggggtgggccacggcccacccg 2655024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6755841 - 6755873
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  6755841 cttcatgggctggggtgggccacggcccacccg 6755873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36584436 - 36584468
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  36584436 cttcatgggctggggtgggccacggcccacccg 36584468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40228577 - 40228545
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  40228577 cttcatgggctggggtgggccacggcccacccg 40228545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44817695 - 44817663
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  44817695 cttcatgggctggggtgggccacggcccacccg 44817663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51001488 - 51001520
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  51001488 cttcatgggctggggtgggccacggcccacccg 51001520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 18491199 - 18491228
Alignment:
Q  1 cttcatgggctggggtgggccacggcccac 30  Q
    ||||||||||||||||||||||||||||||    
T  18491199 cttcatgggctggggtgggccacggcccac 18491228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 19653790 - 19653761
Alignment:
Q  1 cttcatgggctggggtgggccacggcccac 30  Q
    ||||||||||||||||||||||||||||||    
T  19653790 cttcatgggctggggtgggccacggcccac 19653761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11651112 - 11651080
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||| ||||    
T  11651112 cttcatgggctggggtgggccacggcccgcccg 11651080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13233242 - 13233274
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||| ||||||||||||||||||||||||||    
T  13233242 cttcataggctggggtgggccacggcccacccg 13233274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27270366 - 27270398
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||||||| |||||||||    
T  27270366 cttcatgggctggggtgggccacagcccacccg 27270398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31664309 - 31664277
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||| |||||||||||||||||||||||    
T  31664309 cttcatgggatggggtgggccacggcccacccg 31664277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38141704 - 38141672
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||| |||||||||||||||||    
T  38141704 cttcatgggctggggagggccacggcccacccg 38141672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44134506 - 44134538
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||||||||| |||||||    
T  44134506 cttcatgggctggggtgggccacggtccacccg 44134538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16908955 - 16908923
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  16908955 cttcatgggctggggtgggccacggcccacccg 16908923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 18163730 - 18163762
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  18163730 cttcatgggctggggtgggccacggcccacccg 18163762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29126190 - 29126158
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  29126190 cttcatgggctggggtgggccacggcccacccg 29126158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 50527780 - 50527748
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  50527780 cttcatgggctggggtgggccacggcccacccg 50527748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 52571571 - 52571539
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  52571571 cttcatgggctggggtgggccacggcccacccg 52571539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 7160436 - 7160405
Alignment:
Q  2 ttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||||||||||||||||    
T  7160436 ttcatgggctggggtgggccacggcccacccg 7160405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1093024 - 1092992
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||| ||||||||||||||||||||    
T  1093024 cttcatgggctgaggtgggccacggcccacccg 1092992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12251654 - 12251622
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||| ||||||||||||||    
T  12251654 cttcatgggctggggtggaccacggcccacccg 12251622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 13595018 - 13594990
Alignment:
Q  3 tcatgggctggggtgggccacggcccacc 31  Q
    |||||||||||||||||||||||||||||    
T  13595018 tcatgggctggggtgggccacggcccacc 13594990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 22729236 - 22729264
Alignment:
Q  5 atgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||    
T  22729236 atgggctggggtgggccacggcccacccg 22729264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 52201994 - 52202026
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||| |||||||||||||    
T  52201994 cttcatgggctggggtgggtcacggcccacccg 52202026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6849765 - 6849797
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  6849765 cttcatgggctggggtgggccacggcccacccg 6849797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8530095 - 8530127
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  8530095 cttcatgggctggggtgggccacggcccacccg 8530127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16693094 - 16693062
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  16693094 cttcatgggctggggtgggccacggcccacccg 16693062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17285439 - 17285407
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  17285439 cttcatgggctggggtgggccacggcccacccg 17285407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33012202 - 33012170
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||||||||||    
T  33012202 cttcatgggctggggtgggccacggcccacccg 33012170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 919855 - 919827
Alignment:
Q  1 cttcatgggctggggtgggccacggccca 29  Q
    |||||||||||||||||||||||||||||    
T  919855 cttcatgggctggggtgggccacggccca 919827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17880006 - 17879974
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||| |||||||||||||    
T  17880006 cttcatgggctggggtgggtcacggcccacccg 17879974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29169954 - 29169986
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||||||| |||||||||    
T  29169954 cttcatgggctggggtgggccacagcccacccg 29169986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29981852 - 29981824
Alignment:
Q  1 cttcatgggctggggtgggccacggccca 29  Q
    |||||||||||||||||||||||||||||    
T  29981852 cttcatgggctggggtgggccacggccca 29981824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37125705 - 37125737
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||| ||||||||||||||||||||    
T  37125705 cttcatgggctgaggtgggccacggcccacccg 37125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44052604 - 44052572
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    |||||||||||||||||||||||||| ||||||    
T  44052604 cttcatgggctggggtgggccacggctcacccg 44052572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 11179 - 11210
Alignment:
Q  1 cttcatgggctggggtgggccacggcccaccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  11179 cttcatgggctggggtgggccacggcccaccc 11210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12698506 - 12698538
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||||||||||| |||||    
T  12698506 cttcatgggctggggtgggccacggccgacccg 12698538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24130385 - 24130353
Alignment:
Q  1 cttcatgggctggggtgggccacggcccacccg 33  Q
    ||||||||||||||||||||||| |||||||||    
T  24130385 cttcatgggctggggtgggccactgcccacccg 24130353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24635616 - 24635588
Alignment:
Q  1 cttcatgggctggggtgggccacggccca 29  Q
    |||||||||||||||||||||||||||||    
T  24635616 cttcatgggctggggtgggccacggccca 24635588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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