View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_55 (Length: 374)
Name: NF0830_high_55
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_55 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 24766757 - 24766391
Alignment:
| Q |
5 |
cacaaacagttgctgagtggatattaaaaaatggggatgattgatattctaaaagaatggtcttaatataaaagaatgcaggaagccggtccattatatt |
104 |
Q |
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| T |
24766757 |
cacaaacaattgctgagtggatattaaaaaatgaggatggtagatattctaaaagaatggtcttaatacaaaagaatgcatgaagccgttccattat--- |
24766661 |
T |
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| Q |
105 |
attttctaaaagaatgcacttaaagtggagtaaatacacacac--gcactgcattgtattcnnnnnnngactgaaataacaacaataaatcgcagtcatg |
202 |
Q |
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| T |
24766660 |
--ttcctaaaagaatgcacttaaagtggagtaaatacacacacacgcactgcattgtattctttttttgactgaaataacaacaataaatcgcagtgatg |
24766563 |
T |
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| Q |
203 |
gctaattacaaatgcnnnnnnntatagagcaatttaattaaacacagcaatgttgtttcaacaaaaagattcaaaatatctgatacaaaagggactggaa |
302 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
24766562 |
gctaattacaaatgcaaaaaaatatagagcaatttaattaaacgcagcaatgttgtttcaacaaaaagattcaaaatatctgatacaaaagggattagaa |
24766463 |
T |
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| Q |
303 |
ataatacttatgaaacaaaagttgaaaaacttgcaacatatgaacccaaaaccaattctggaggcttagaca |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24766462 |
ataatacttatgaaacaaaagttgaaaaacttgcaacatatgaacccaaaaccaattctggaggcttagaca |
24766391 |
T |
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