View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_71 (Length: 345)
Name: NF0830_high_71
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 11871888 - 11871554
Alignment:
| Q |
1 |
tataagaatagtcgaaacaattggtcaaaataataatactccaaacaaagatttttattcataaaagctgttaaaaataaatttaatttgtaccnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11871888 |
tataagaatagtcgaaacaattggtcaaaaaaataatactccaaacaaagatttttattcataaaagctgttaaaaataaatttaatttgtaccaaaaaa |
11871789 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnngagcgattatttttcttgttaaactaataataatataagtggtaaatgagcgaatcattcaagaaaacccatgttcgatttttgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11871788 |
aataaaaaataaaa-gagcgattatttttcttgttaaactaataataatataagtggtaaatgagcgaatcattcaagaaaacccatgttcgatttttgg |
11871690 |
T |
|
| Q |
201 |
ttggaacaatttttgaccagactatcattatttcacaatccaactttgaattactagagcctattttcatctgggaatcgaagagttaacacc-aagtgg |
299 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
11871689 |
atggaacaatttttgaccagactatcattacttcacaacccaactctgaattattagagcctattttcatctgggaatcgaagagttaacgccaaagtgg |
11871590 |
T |
|
| Q |
300 |
caatattttcgtgcttctgagaacacagtatctctg |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
11871589 |
caatattttcgtgcttctgagaacacagtatctctg |
11871554 |
T |
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