View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_94 (Length: 266)
Name: NF0830_high_94
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_94 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 32313313 - 32313079
Alignment:
| Q |
1 |
atagtagtcactaaaataaataaccaaaatggaatgaaaaggcttgcattgttacatacaatttaaattttaaattttaagttaaagcaattcatatact |
100 |
Q |
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| T |
32313313 |
atagtagtcactaaaataaataaccaaaatgaaattaaaaggcttgcattgttacatacaatttaaattttaaattttaagttaaagcaatt--tatact |
32313216 |
T |
|
| Q |
101 |
ttatattaaaaagtgcataaagtttttattggtttgaccatgaaatgatcacataatagaacaagcatgagaaggttgtgaagcataatggggaataggg |
200 |
Q |
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| T |
32313215 |
ttatattaaaaagtgcataaagtttttattggtttgaccatgaaatgatcacataatagaccaagcatgagaaggttgtgaagcataatggggaataggg |
32313116 |
T |
|
| Q |
201 |
ccattactaatcacactctaatcaatttgcagatgaa |
237 |
Q |
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| T |
32313115 |
ccattactaatcacactctaatcaatttgcagatgaa |
32313079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 39364925 - 39365098
Alignment:
| Q |
1 |
atagtagtcactaaaataaataaccaaaatggaatgaaaaggcttgcattgttacatacaatttaaattttaaattttaagttaaagcaattcat----a |
96 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| | |
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| T |
39364925 |
atagtagtcactaaaataaataactaaaatggaatgaaaaagcttgcatcgttacatacaatttaagttttaaa-------ttaaagcaattcatattca |
39365017 |
T |
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| Q |
97 |
tactttat-attaaaaagtgcataaag-----tttttattggtttgaccatgaaatgatcacataatagaacaagcatgag |
171 |
Q |
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||||| || || |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39365018 |
tacttcataataaaaaagtgcacaaagttttttttttattggtttgaccatgaaatgatcacatgatagaacaagcatgag |
39365098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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