View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_high_96 (Length: 260)
Name: NF0830_high_96
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_96 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 43802241 - 43802010
Alignment:
| Q |
1 |
aagtgtaatccatcaaccggatacctggaaaaactaaatcaccaggagcattttaagtctaatatgtccttgttgctggactggtctccatttttatcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43802241 |
aagtgtaatccatcaaccggatacctggaaaaactaaatcaccaggagcattttaagtctaatatgtccttgttgctggactggtctccatttttatcag |
43802142 |
T |
|
| Q |
101 |
aagcagaaattgtgaaacaagtcagtttcagaatttttccataatccattttaattagatcgttctttcagaacatattgaatgatttatactttgagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43802141 |
aagcagaaattgtgaaacaagtcagtttcagaatttttccataatccattttaattagatcgttctttcagaacatattgaatgatttatactttgagtt |
43802042 |
T |
|
| Q |
201 |
ttcagcttcattgttccagataccataatttt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43802041 |
ttcagcttcattgttccagataccataatttt |
43802010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3192 times since January 2019
Visitors: 6172