View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_high_99 (Length: 252)
Name: NF0830_high_99
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_99 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 3892156 - 3892399
Alignment:
| Q |
9 |
agataatactaatcaattaaatttttatctatggatatacgttagttacataatcatgaaaaaagcactgtgatatataaaaacagttacgtgaagactc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3892156 |
agataatactaatcaattaaatttttatctatggatatacgttagttacataatcatgaaaaaagcactgtgatatataaaaacagttacgtgaagactc |
3892255 |
T |
|
| Q |
109 |
aatattggtgaagtgttcctggtcaagtttcaagaagaacaaaattaaaattaacctcacaaaaaagtgtaaaacgacaagttttgaaacatgccacggt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3892256 |
aatattggtgaagtgttcctggtcaagtttcaagaagaacaaaattaaaattaaactcacaaaaaagtgtaaaacgacaagttttgaaacatgccacggt |
3892355 |
T |
|
| Q |
209 |
tctttgaatcctaaaaagaaatctagtatttaaggagttatgtt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3892356 |
tctttgaatcctaaaaagaaatctagtatttaaggagttatgtt |
3892399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3146 times since January 2019
Visitors: 6169