View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_1 (Length: 893)

Name: NF0830_low_1
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_1
NF0830_low_1
[»] chr1 (6 HSPs)
chr1 (456-735)||(30109970-30110252)
chr1 (190-315)||(30110313-30110438)
chr1 (69-174)||(30111603-30111708)
chr1 (806-849)||(30109873-30109916)
chr1 (849-887)||(30109812-30109850)
chr1 (30-69)||(30111802-30111841)
[»] chr3 (3 HSPs)
chr3 (312-454)||(53556913-53557055)
chr3 (312-459)||(44751629-44751776)
chr3 (32-69)||(38014677-38014714)
[»] chr2 (1 HSPs)
chr2 (34-69)||(6084738-6084773)
[»] chr8 (1 HSPs)
chr8 (32-65)||(28280453-28280486)
[»] chr5 (1 HSPs)
chr5 (32-69)||(33338279-33338316)
[»] chr4 (2 HSPs)
chr4 (404-457)||(7774605-7774658)
chr4 (32-69)||(22665714-22665751)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 456 - 735
Target Start/End: Complemental strand, 30110252 - 30109970
Alignment:
Q  456 ttattagatgaactttgtatccaaaatttcattccttaacattatgtttggtttagaagagta-ttatggagt------aaatttttaactttgattaaa 548  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||||| | || || ||       |||||||||||||||||||||    
T  30110252 ttattagatgaactttatatccaaaatttcattctttaatattatgtttgatttagaagagaagttgtgaagagataacaaatttttaactttgattaaa 30110153  T
Q  549 taaattgaataccgcacttctaaattctaatatagagagtattatttatttatatactcttcctttaattatttgtgttttttggatcatttgtttcttc 648  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||  ||||||||||||||||||||||||||    
T  30110152 taaattgaataccgcacttctaaattctaatatagagagtattatttat----acactcttcctttaattatgagtgttttttggatcatttgtttcttc 30110057  T
Q  649 ctggataaaagatcattagaaaggagacccttgttttgcttgctctataatcaaatgaaataagtagtaaatgtttctatttctttc 735  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30110056 ctggataaaatatcattagaaaggagacccttgttttgcttgctctataatcaaatgaaataagtagtaaatgtttctatttctttc 30109970  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 190 - 315
Target Start/End: Complemental strand, 30110438 - 30110313
Alignment:
Q  190 aactaaagaagaagggaaaatgtataattcactttgaaacataaagttcatctttcattaaaatttgcttaaagttcacacggttgaannnnnnncataa 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||    
T  30110438 aactaaagaagaagggaaaatgtataattcactttgaaacataaagttcatctttcattaaaatttgcttaaagttcacacggtggaattttttccataa 30110339  T
Q  290 aaataatgtgctattaaatatgatca 315  Q
    ||||||||||||||||||||||||||    
T  30110338 aaataatgtgctattaaatatgatca 30110313  T

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Target: chr1; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 30111708 - 30111603
Alignment:
Q  69 atccaatttcacttatttatctctttttgataaatagtaaaaaatgttattcgtataatcataattaatgttgaattaaaatgataaattaataggaaca 168  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30111708 atccaatttcacttatttatctcttttcgataaatagtaaaaaatgttattcgtataattataattaatgttgaattaaaatgataaattaataggaaca 30111609  T
Q  169 attctt 174  Q
    ||||||    
T  30111608 attctt 30111603  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 806 - 849
Target Start/End: Complemental strand, 30109916 - 30109873
Alignment:
Q  806 acacaaaacatggatgattttataggcaaagcaagaggaatggg 849  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30109916 acacaaaacatggatgattttataggcaaagcaagaggaatggg 30109873  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 849 - 887
Target Start/End: Complemental strand, 30109850 - 30109812
Alignment:
Q  849 gatgtccccattccacacggccaccatacttcatctcac 887  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30109850 gatgtccccattccacacggccaccatacttcatctcac 30109812  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 30111841 - 30111802
Alignment:
Q  30 tcggaaaatgataaaaagtggtcaagtcaatttataaaaa 69  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  30111841 tcggaaaatgataaaaagtggtcaagtcaacttataaaaa 30111802  T

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Target: chr3 (Bit Score: 123; Significance: 1e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 312 - 454
Target Start/End: Complemental strand, 53557055 - 53556913
Alignment:
Q  312 atcatttaagtaatgggacactattgcgattttatagttttctttcgtcaaattaattataatcataagcgatgaatcgtatcgtattacaatattttgc 411  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53557055 atcatttaagtaatgagacactattgcgattttatagttttctttcgtcaaattaattataatcataagcgatgaatcgtatcgcattacaatattttgc 53556956  T
Q  412 aaagatgtatatgacctgtgcggcagcacagatggatgatcta 454  Q
    |||||||||||||||| |||||||||||| | |||||||||||    
T  53556955 aaagatgtatatgacccgtgcggcagcacgggtggatgatcta 53556913  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 312 - 459
Target Start/End: Complemental strand, 44751776 - 44751629
Alignment:
Q  312 atcatttaagtaatgggacactattgcgattttatagttttctttcgtcaaattaattataatcataagcgatgaatcgtatcgtattacaatattttgc 411  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  44751776 atcatttaagtaatgagacactattgcgattttatagttttctttcatcaaattaattataatcataagcgatgaatcatatcgcattacaatattttgc 44751677  T
Q  412 aaagatgtatatgacctgtgcggcagcacagatggatgatctagttat 459  Q
    |||||||||||||||| |||||||||||  | ||||||||||||||||    
T  44751676 aaagatgtatatgacccgtgcggcagcatgggtggatgatctagttat 44751629  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 38014677 - 38014714
Alignment:
Q  32 ggaaaatgataaaaagtggtcaagtcaatttataaaaa 69  Q
    |||||||||||||||||||||||||||| |||||||||    
T  38014677 ggaaaatgataaaaagtggtcaagtcaacttataaaaa 38014714  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 6084773 - 6084738
Alignment:
Q  34 aaaatgataaaaagtggtcaagtcaatttataaaaa 69  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6084773 aaaatgataaaaagtggtcaagtcaatttgtaaaaa 6084738  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 28280486 - 28280453
Alignment:
Q  32 ggaaaatgataaaaagtggtcaagtcaatttata 65  Q
    |||||||||||||||||||||||||||| |||||    
T  28280486 ggaaaatgataaaaagtggtcaagtcaacttata 28280453  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 33338279 - 33338316
Alignment:
Q  32 ggaaaatgataaaaagtggtcaagtcaatttataaaaa 69  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  33338279 ggaaaatgataaaaagtagtcaagtcaacttataaaaa 33338316  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 7774658 - 7774605
Alignment:
Q  404 tattttgcaaagatgtatatgacctgtgcggcagcacagatggatgatctagtt 457  Q
    |||||||||||||||| ||||||| |||||||||||| | | || |||||||||    
T  7774658 tattttgcaaagatgtttatgacccgtgcggcagcactggtagaagatctagtt 7774605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 22665751 - 22665714
Alignment:
Q  32 ggaaaatgataaaaagtggtcaagtcaatttataaaaa 69  Q
    |||||||||||||||||||||||||||| || ||||||    
T  22665751 ggaaaatgataaaaagtggtcaagtcaaattgtaaaaa 22665714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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