View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_100 (Length: 306)
Name: NF0830_low_100
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 39373798 - 39373593
Alignment:
| Q |
1 |
acaccttttagagttctttataattggcatactttagtttaccatatatgttcaaacatgatgcagtacagaaactgttgggtacataaatgtcagcttc |
100 |
Q |
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| T |
39373798 |
acaccttttagagttctttataattggcatactttagtttaccatatatgtcgaaacatgatgcagtacagaaactgttgggtacataaatgtcagcttc |
39373699 |
T |
|
| Q |
101 |
actgtctcgtttaacatacacaaataaccaaatttatgtagtgtttgatttcttatcggtagctccgtacatgcggatacatgttaaagaatcgctccct |
200 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39373698 |
actgtctcgtttagcatacacaaataaacaaatttatgtagtgtttgatttcttatcggtagctccatacatgcggatacatgttaaagaatcgctccct |
39373599 |
T |
|
| Q |
201 |
ttaggc |
206 |
Q |
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|||||| |
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| T |
39373598 |
ttaggc |
39373593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 39093482 - 39093389
Alignment:
| Q |
203 |
aggccccttcggcatctctaatacaatatatacataattgaatctcaaaattgttgagacacgaaaattaaaatttggttaatgacataagagt |
296 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093482 |
aggccccttgggcatctctaatacaatatatacataattgaatctcaaaattgttgagacacgaaaattaaaatttggttaatgacataagagt |
39093389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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