View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_low_101 (Length: 300)
Name: NF0830_low_101
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_101 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 1139473 - 1139217
Alignment:
| Q |
29 |
accttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1139473 |
accttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctca |
1139374 |
T |
|
| Q |
129 |
ttcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaacaattttgtttgatagaaatat |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1139373 |
ttcatgtcatgcatagccttaggaatctttaataattcttccaatccatttgaagtaaggttatgagtaatagccgaacaattttgtttgatagaaatat |
1139274 |
T |
|
| Q |
229 |
tggtttggttattttggtcatatgatgtttttgagatgttggataatagtattggag |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1139273 |
tggtttggttattttggtcatatgatgtttttgagatgttggatagtagtattggag |
1139217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 1136262 - 1136009
Alignment:
| Q |
29 |
accttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1136262 |
accttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcg |
1136163 |
T |
|
| Q |
129 |
ttcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaacaattttgtttgatagaaatat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
1136162 |
ttcatgtcatgcatagccttaggaatctttaataattcttccaaaccatttgaagtaaggttatgag---tagccggacaattttgtttgatagaaatat |
1136066 |
T |
|
| Q |
229 |
tggtttggttattttggtcatatgatgtttttgagatgttggataatagtattggag |
285 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1136065 |
tggtttggttatcatggtcatatgatgtttttgagatgttggataataatattggag |
1136009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 54479264 - 54479475
Alignment:
| Q |
29 |
accttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctca |
128 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
54479264 |
acctattgtcaagaacataaacgcaacctttggtgtttgtttgaatggagttttatgaatcataggttccaatgaagctctccaaaacaattcatcctca |
54479363 |
T |
|
| Q |
129 |
ttcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaacaattttgtttgatagaaatat |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||| || || |||| ||| |||| | |||||||||||| ||||| | || | |||| || |||||||||||||| |
|
|
| T |
54479364 |
ttcatgtcatgcatagccataggaatcttcaacaagtctttcaacccatgtgaagtaaggttattagtaacaaccaagcaatattttttgatagaaatat |
54479463 |
T |
|
| Q |
229 |
tggtttggttat |
240 |
Q |
| |
|
| |||||||||| |
|
|
| T |
54479464 |
ttgtttggttat |
54479475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 31269134 - 31269290
Alignment:
| Q |
30 |
ccttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcat |
129 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||| || |||||||||||||||||||| || |||| |
|
|
| T |
31269134 |
cctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaatcatcgaagctctccaaaataattcctcttcat |
31269233 |
T |
|
| Q |
130 |
tcatgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaa |
186 |
Q |
| |
|
|||| |||||||||||| | |||||||| || ||||| ||||| |||||| |||||| |
|
|
| T |
31269234 |
tcatatcatgcatagccattggaatcttcaaaaattcctccaacccatttgaagtaa |
31269290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2036 times since January 2019
Visitors: 6156