View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_102 (Length: 300)
Name: NF0830_low_102
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_102 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 38466284 - 38466572
Alignment:
| Q |
3 |
agagggcatctgtatccacagacatctatgtaccatgcagcaaatgctatatttgatatgcaaactacaatttctttctaaatacaaaacagttcaatat |
102 |
Q |
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| T |
38466284 |
agagggcatctgtatccacagacatctatgtaccatgcagcaaatgctatatttgatatgcaaactacaatttctttctaaatacaaaacagttcaatat |
38466383 |
T |
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| Q |
103 |
tcttcttatacaggtgaggaagaaagtagaaaatctggttgttttctctgtagcagtatcccacaaaagggacacagcggttttgagggtactgcttgag |
202 |
Q |
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| T |
38466384 |
tcttcttatacaggtgaggaagaaagtagaaaatctggttgttttctctgtagcagtatcccacaaaagggacacagcggttttgagggtactgcttgag |
38466483 |
T |
|
| Q |
203 |
aagatctgtttgaagagtctgaatctatacaaaatgaagacatcctaaaaagtggttccggcgccagcctaattaacacaaacctatga |
291 |
Q |
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| T |
38466484 |
aagatctgtttgaagagtctgaatctatacaaaatgaagacattctaaaaagtggttccggcgccaacctaattaacacaaacctatga |
38466572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 81 - 291
Target Start/End: Complemental strand, 21774313 - 21774109
Alignment:
| Q |
81 |
taaatacaaaacagttcaatattcttcttatacaggtgaggaagaaagtagaaaatctggttgttttctctgtagcagtatcccacaaaagggacacagc |
180 |
Q |
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| T |
21774313 |
taaatacaaaacagttcaatattctt---atacaggtgaggaagaaagtagaaagtctggctgttttctctgtagcagtatcccacagaagggacacagc |
21774217 |
T |
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| Q |
181 |
ggttttgagggtactgcttgagaagatctgtttgaagagtctgaatctatacaaaatgaagacatcctaaaaagtggttccggcgccagcctaattaaca |
280 |
Q |
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| T |
21774216 |
ggttttgaggaaactgcttgagaagaactatttgaagagtctgaatctatacaaaatgaagacattctaaaaagtggttccggcgccaaccta---aaca |
21774120 |
T |
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| Q |
281 |
caaacctatga |
291 |
Q |
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||||||||||| |
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| T |
21774119 |
caaacctatga |
21774109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 21774419 - 21774340
Alignment:
| Q |
3 |
agagggcatctgtatccacagacatctatgtaccatgcagcaaatgctatatttgatatgcaaactacaatttctttcta |
82 |
Q |
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||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
21774419 |
agagggcatgtgaatccacagacaactatgtaccatgcagcaaatgctatattagatatgcaaactacaatttatttcta |
21774340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 32919686 - 32919839
Alignment:
| Q |
106 |
tcttatacaggtgaggaagaaagtagaaaatctggttgttttctctgtagcagtatcccacaaaagggacacagcggttttgagggtactgcttga---g |
202 |
Q |
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||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| || | |
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| T |
32919686 |
tcttatacaggtgcagtggaaagtagaaaatcaggttgttttctctgtagcagtatcccacaaaaggggcacaacggttttgaggatactgctcgagagg |
32919785 |
T |
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| Q |
203 |
aagatctgtttgaagagtctgaatctatacaaaatgaagacatcctaaaaagtg |
256 |
Q |
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|||||| ||||||||||||||||||| || | |||||||||| |||||||||| |
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| T |
32919786 |
aagatccatttgaagagtctgaatctagactagatgaagacattctaaaaagtg |
32919839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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