View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_103 (Length: 289)

Name: NF0830_low_103
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_103
NF0830_low_103
[»] chr7 (11 HSPs)
chr7 (28-169)||(32859233-32859380)
chr7 (25-137)||(7677707-7677819)
chr7 (25-137)||(4261243-4261356)
chr7 (25-137)||(38072188-38072301)
chr7 (28-137)||(37864206-37864317)
chr7 (28-138)||(38071935-38072047)
chr7 (28-137)||(4261495-4261606)
chr7 (28-137)||(17145660-17145772)
chr7 (28-133)||(669002-669109)
chr7 (62-137)||(38779498-38779573)
chr7 (28-137)||(668217-668328)
[»] chr1 (22 HSPs)
chr1 (28-176)||(17050447-17050600)
chr1 (28-169)||(12925873-12926020)
chr1 (28-133)||(20794331-20794436)
chr1 (28-169)||(31390726-31390871)
chr1 (28-136)||(47334238-47334347)
chr1 (76-171)||(40649516-40649618)
chr1 (25-137)||(6076012-6076122)
chr1 (28-136)||(23440656-23440765)
chr1 (61-172)||(46133689-46133807)
chr1 (28-137)||(9948033-9948144)
chr1 (28-136)||(6076767-6076876)
chr1 (26-137)||(38930350-38930463)
chr1 (30-137)||(48972346-48972455)
chr1 (28-138)||(16271047-16271159)
chr1 (28-137)||(193888-193997)
chr1 (28-137)||(16270245-16270357)
chr1 (30-137)||(50826992-50827101)
chr1 (26-132)||(48971748-48971856)
chr1 (28-137)||(43737767-43737878)
chr1 (48-137)||(9948807-9948897)
chr1 (28-136)||(51975126-51975236)
chr1 (36-84)||(194610-194658)
[»] scaffold0041 (1 HSPs)
scaffold0041 (25-138)||(27258-27371)
[»] chr3 (19 HSPs)
chr3 (37-131)||(8436574-8436668)
chr3 (37-168)||(8440119-8440256)
chr3 (25-137)||(36750083-36750196)
chr3 (28-136)||(45500512-45500620)
chr3 (25-137)||(52492176-52492289)
chr3 (28-137)||(38922781-38922892)
chr3 (28-138)||(41756331-41756443)
chr3 (28-137)||(36750337-36750447)
chr3 (28-138)||(45242103-45242215)
chr3 (28-137)||(44686292-44686403)
chr3 (28-137)||(44687062-44687173)
chr3 (28-136)||(3971801-3971911)
chr3 (28-136)||(3997967-3998077)
chr3 (28-137)||(38923564-38923675)
chr3 (28-137)||(45242886-45242997)
chr3 (28-116)||(8653622-8653709)
chr3 (28-137)||(3971030-3971141)
chr3 (28-137)||(19132711-19132822)
chr3 (28-137)||(32490094-32490205)
[»] chr8 (8 HSPs)
chr8 (25-133)||(5035174-5035282)
chr8 (28-137)||(37639749-37639860)
chr8 (28-137)||(32536746-32536857)
chr8 (28-137)||(34992163-34992274)
chr8 (28-138)||(38023661-38023773)
chr8 (36-78)||(10501822-10501864)
chr8 (28-70)||(38024430-38024472)
chr8 (30-137)||(41859348-41859457)
[»] chr5 (10 HSPs)
chr5 (25-137)||(33001970-33002082)
chr5 (30-137)||(8204158-8204267)
chr5 (28-137)||(33002715-33002826)
chr5 (37-116)||(42518811-42518891)
chr5 (28-137)||(15183916-15184027)
chr5 (28-135)||(8040235-8040344)
chr5 (28-137)||(686454-686565)
chr5 (28-136)||(687247-687357)
chr5 (48-137)||(12190078-12190168)
chr5 (28-138)||(15183126-15183238)
[»] chr4 (25 HSPs)
chr4 (25-137)||(39523169-39523281)
chr4 (28-137)||(36451327-36451437)
chr4 (28-132)||(17648044-17648149)
chr4 (28-137)||(45230403-45230514)
chr4 (25-137)||(11806129-11806239)
chr4 (30-136)||(9939161-9939269)
chr4 (28-138)||(21166274-21166386)
chr4 (28-137)||(11417725-11417836)
chr4 (28-137)||(29651231-29651342)
chr4 (28-137)||(36865616-36865727)
chr4 (28-137)||(25970144-25970250)
chr4 (28-137)||(10424958-10425069)
chr4 (28-137)||(26611182-26611293)
chr4 (28-137)||(38143636-38143747)
chr4 (28-137)||(39522413-39522524)
chr4 (28-70)||(23383415-23383457)
chr4 (28-137)||(26610383-26610495)
chr4 (28-135)||(29650455-29650564)
chr4 (34-137)||(36450766-36450871)
chr4 (28-133)||(10424165-10424272)
chr4 (28-133)||(31835190-31835297)
chr4 (58-137)||(11417867-11417947)
chr4 (27-137)||(25970701-25970813)
chr4 (58-137)||(36864855-36864935)
chr4 (58-137)||(38694740-38694820)
[»] chr6 (9 HSPs)
chr6 (28-137)||(22579973-22580084)
chr6 (26-137)||(33480525-33480638)
chr6 (28-138)||(15082434-15082546)
chr6 (28-138)||(33018204-33018316)
chr6 (28-137)||(3542852-3542963)
chr6 (28-137)||(15083217-15083328)
chr6 (38-137)||(7193376-7193474)
chr6 (28-137)||(33479734-33479846)
chr6 (58-137)||(3542993-3543073)
[»] chr2 (5 HSPs)
chr2 (28-137)||(21471853-21471964)
chr2 (28-137)||(4479603-4479712)
chr2 (28-134)||(38834428-38834536)
chr2 (28-137)||(21471055-21471166)
chr2 (58-138)||(37548035-37548116)
[»] scaffold0700 (1 HSPs)
scaffold0700 (37-169)||(5319-5457)
[»] scaffold0311 (1 HSPs)
scaffold0311 (28-137)||(58-170)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 32859380 - 32859233
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  32859380 acatgaaagtgagagggtggaagatagtgtaaaaaataatttaatgttgagagagtagtataagaatgtgttccacatttaatctaatgcatactatcaa 32859281  T
Q  128 ctttcccatg------aaaaactccgttgacccatgctaaatgccacc 169  Q
    ||||||| ||      |||||||||| |||||||||||||||||||||    
T  32859280 ctttcccgtgatgaaaaaaaactccgctgacccatgctaaatgccacc 32859233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 7677707 - 7677819
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||||||||||||||||| ||||||||||||| || |||||||| | ||  ||||||||||||| | |||||||||||||| | || ||    
T  7677707 agaacatgaaagagagagggtggaagatattgtaaaaaataatttagtgttgagagaatatgataagaatgtgttcctcatttaatctaatgaacatgat 7677806  T
Q  125 caactttcccatg 137  Q
    |||||||||||||    
T  7677807 caactttcccatg 7677819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 4261356 - 4261243
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatatta 123  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||  |||||||||| || | |||||||||||||| | || |    
T  4261356 agaacatgaaagagagaggttggaagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatggacatga 4261257  T
Q  124 tcaactttcccatg 137  Q
    ||||||||||||||    
T  4261256 tcaactttcccatg 4261243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 38072188 - 38072301
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatatta 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||  |||||||||| ||   |||||||||||||| | || |    
T  38072188 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcatcatttaatctaatggacatga 38072287  T
Q  124 tcaactttcccatg 137  Q
    ||||||||||||||    
T  38072288 tcaactttcccatg 38072301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 37864206 - 37864317
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| | || |||    
T  37864206 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatc 37864305  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  37864306 aactttcccatg 37864317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 38072047 - 38071935
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  38072047 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 38071948  T
Q  126 aactttcccatga 138  Q
    |||||||||||||    
T  38071947 aactttcccatga 38071935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 4261495 - 4261606
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||||| ||||||| ||||  |||  ||| |||| | |||||||||||||| | || |||    
T  4261495 acatgaaagagagagtgtgaaagatagtataaaaaaataatctaatggttgagagagtatgatagaaatatgttcctcatttaatctaatggagatgatc 4261594  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  4261595 aactttcccatg 4261606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 17145772 - 17145660
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa--taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||| ||| |||||||| |||||||  ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  17145772 acatgaaagagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 17145673  T
Q  125 caactttcccatg 137  Q
    |||||||||||||    
T  17145672 caactttcccatg 17145660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 669002 - 669109
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  ||| |||| |||| | ||||| |||||||| |||| |||    
T  669002 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttgatctaatggatatgatc 669101  T
Q  126 aactttcc 133  Q
    ||||||||    
T  669102 aactttcc 669109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 38779498 - 38779573
Alignment:
Q  62 aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 137  Q
    ||||||||| |||||||| |||| ||||||||| | || | |||||||||||||| | || |||||||||||||||    
T  38779498 aataatctagtgttgagagagtattataagaatatattcctcatttaatctaatggacatgatcaactttcccatg 38779573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 668328 - 668217
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||  | ||||||| ||||  ||| |||| ||||   |||||||||||||| | || |||    
T  668328 acatgaaagagagagtgtgaaagatagtataaaaaaataatctggtggttgagagagtatgataggaatatgttcttcatttaatctaatggacatgatc 668229  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  668228 aactttcccatg 668217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 17050600 - 17050447
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  || ||||||||||||| | ||||||||    
T  17050600 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatattgagagagtagtataagaatgtgtaccatatttaatctaatgaacattatcaa 17050501  T
Q  128 ctttcccatg-----aaaaactccgttgacccatgctaaatgccaccttattat 176  Q
    ||||||||||     |||||||||  ||||| |||||||||||||||| |||||    
T  17050500 ctttcccatggtgaaaaaaactccactgacctatgctaaatgccacctgattat 17050447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 12926020 - 12925873
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| | ||||||||    
T  12926020 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagagagtagtataagaatgtattccacatttaatctaatggacattatcaa 12925921  T
Q  128 ctttcccatg------aaaaactccgttgacccatgctaaatgccacc 169  Q
    |||| | |||      |||||||||  ||||| |||||||||||||||    
T  12925920 cttttctatggtggaaaaaaactccactgaccaatgctaaatgccacc 12925873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 20794436 - 20794331
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||||||| ||||||||    
T  20794436 acatgaaagagagagggtggaaaatagtgtaaaaaataatctaatgttgagagagtgatataagaatgtgttccacatttaatctaatgcacattatcaa 20794337  T
Q  128 ctttcc 133  Q
    ||||||    
T  20794336 ctttcc 20794331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 31390726 - 31390871
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    |||||||||||||||  || |||||||||||||||||||||||||||||||| ||||| |||| |||||||| | |||||| || |||| | || |||||    
T  31390726 acatgaaagagagag--tgaaagatagtgtaaaaaataatctaatgttgagagagtaggataaaaatgtgttcctcatttattccaatggacataatcaa 31390823  T
Q  128 ctttcccatg------aaaaactccgttgacccatgctaaatgccacc 169  Q
    ||||||||||      || |||||| ||||||||||||||||||||||    
T  31390824 ctttcccatggtgggaaagaactccattgacccatgctaaatgccacc 31390871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 47334347 - 47334238
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaa-aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 126  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||| ||||| || |||||| |||||||||||||| | || ||||    
T  47334347 acatgaaagagagatggtggaagatagtgtaaaacaataatctagtgttgagagagtaggataaggatttgtttctcatttaatctaatggacataatca 47334248  T
Q  127 actttcccat 136  Q
    ||||||||||    
T  47334247 actttcccat 47334238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 40649516 - 40649618
Alignment:
Q  76 gagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg-------aaaaactccgttgacccatgctaaatgccac 168  Q
    |||| ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||       |||||||||  | ||||||||||||||||||    
T  40649516 gagagagtagtataagaatgtgttccacatttaatctaatggacattatcaactttcccatggtgaaaaaaaaactccactaacccatgctaaatgccac 40649615  T
Q  169 ctt 171  Q
    |||    
T  40649616 ctt 40649618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 6076122 - 6076012
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||||||  ||||||||||||||||||||||| || |||||||| | ||  |||| ||||| || | |||||||||||||| | || ||    
T  6076122 agaacatgaaagagagag--tggaagatagtgtaaaaaataatttagtgttgagagactatgataaaaatgtattcctcatttaatctaatggacatgat 6076025  T
Q  125 caactttcccatg 137  Q
    |||||||| ||||    
T  6076024 caactttctcatg 6076012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 23440765 - 23440656
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 126  Q
    ||||||||||||||| ||| |||||||| |||||||||||||| | ||||||| ||||  ||| |||| |||||| |||||||||||||| | || ||||    
T  23440765 acatgaaagagagagtgtgaaagatagtataaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacataatca 23440666  T
Q  127 actttcccat 136  Q
    ||||| ||||    
T  23440665 acttttccat 23440656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 46133807 - 46133689
Alignment:
Q  61 aaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg-------aaaaactccgttgacc 153  Q
    ||||||||||||||||||| ||||||||||||||||| | | |||||||||| ||| | || ||  |||||||||||       |||||||||  |||||    
T  46133807 aaataatctaatgttgagagagtagtataagaatgtgctcctcatttaatctgatggacataattcactttcccatggtggggaaaaaactccagtgacc 46133708  T
Q  154 catgctaaatgccacctta 172  Q
    |||||||||||||||||||    
T  46133707 catgctaaatgccacctta 46133689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 9948144 - 9948033
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| |||    
T  9948144 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgatc 9948045  T
Q  126 aactttcccatg 137  Q
    |||||| |||||    
T  9948044 aacttttccatg 9948033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 6076767 - 6076876
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 126  Q
    ||||||||||||||| ||| |||||||| |||||||||||||| | ||||||| ||||  ||| |||| |||| | |||||||| ||||| | || ||||    
T  6076767 acatgaaagagagagtgtgaaagatagtataaaaaataatctattggttgagagagtatgataggaatatgttactcatttaatataatggacatgatca 6076866  T
Q  127 actttcccat 136  Q
    ||||| ||||    
T  6076867 acttttccat 6076876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 38930463 - 38930350
Alignment:
Q  26 gaacatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatatta 123  Q
    ||||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  ||| |||| |||| |  ||||||| ||||| |||| |    
T  38930463 gaacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttccttatttaatttaatggatatga 38930364  T
Q  124 tcaactttcccatg 137  Q
    ||||||||||||||    
T  38930363 tcaactttcccatg 38930350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 48972346 - 48972455
Alignment:
Q  30 atgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    ||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| | || |||||    
T  48972346 atgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatcaa 48972445  T
Q  128 ctttcccatg 137  Q
    |||| |||||    
T  48972446 cttttccatg 48972455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 16271047 - 16271159
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| || ||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  16271047 acatgaaagagagagtgtgaaatatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 16271146  T
Q  126 aactttcccatga 138  Q
    |||||||||||||    
T  16271147 aactttcccatga 16271159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 193997 - 193888
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    |||||||||||||| | || |||||| | |||||||||||||| ||| |||| ||||  |||||||| |||| | |||||||| ||||| | || || ||    
T  193997 acatgaaagagagatgatgaaagataatataaaaaataatctagtgtggagagagtatgataagaatatgttcctcatttaatttaatggacatgattaa 193898  T
Q  128 ctttcccatg 137  Q
    ||||| ||||    
T  193897 ctttctcatg 193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 16270357 - 16270245
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa--taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||| ||| ||| |||||||| |||||||  ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  16270357 acatgaaagagggagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 16270258  T
Q  125 caactttcccatg 137  Q
    |||||||||||||    
T  16270257 caactttcccatg 16270245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 50826992 - 50827101
Alignment:
Q  30 atgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    ||||||||||||| ||| |||||| | ||||||| |||| || || |||||| ||||  |||| ||| |||||| |||||||||||||| | || |||||    
T  50826992 atgaaagagagagtgtgaaagatactataaaaaaataatttagtggttgagagagtatgataaaaatatgtttctcatttaatctaatggacatgatcaa 50827091  T
Q  128 ctttcccatg 137  Q
    ||||||||||    
T  50827092 ctttcccatg 50827101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 48971856 - 48971748
Alignment:
Q  26 gaacatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatatta 123  Q
    ||||||||||||||||| ||| |||||||| | |||||||||| || | ||||||| ||||  ||| |||| |||| | |||||||||||||  |||| |    
T  48971856 gaacatgaaagagagagtgtgaaagatagtataaaaaaataatatagtggttgagagagtatgataggaatatgttcctcatttaatctaatttatatga 48971757  T
Q  124 tcaactttc 132  Q
    |||||||||    
T  48971756 tcaactttc 48971748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 43737878 - 43737767
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    |||| |||||||||  ||| |||||||||||||||| ||||||| || |||||| ||||  |||| ||| | || | |||||||||||||| | || |||    
T  43737878 acatcaaagagagaatgtgaaagatagtgtaaaaaaataatctagtggttgagagagtatgataaaaatatattcctcatttaatctaatggacatgatc 43737779  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  43737778 aactttcccatg 43737767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 9948807 - 9948897
Alignment:
Q  48 aagatagtgtaaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 137  Q
    |||||||| |||||||||||||| || |||| | ||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||||    
T  9948807 aagatagtataaaaaataatctagtggttgatagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatg 9948897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 51975126 - 51975236
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | ||| ||| ||||  ||| |||| |||| | |||||||||||||  | || |||    
T  51975126 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttaagagagtatgataggaatatgttcctcatttaatctaattgacatgatc 51975225  T
Q  126 aactttcccat 136  Q
    |||||||||||    
T  51975226 aactttcccat 51975236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 194610 - 194658
Alignment:
Q  36 gagagagggtggaagatagtgtaaaaaataatctaatgttgagatagta 84  Q
    |||||||| || |||||||| |||||||||||||| ||| |||||||||    
T  194610 gagagaggatgaaagatagtataaaaaataatctagtgtagagatagta 194658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 27371 - 27258
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||  ||||||||||||| | |||||||||||||| | || ||    
T  27371 agaacatgaaagagagagggtggaagatagtgtaaaaaataatttagtgttgagagagtatgataagaatgtgttcctcatttaatctaatggacatgat 27272  T
Q  125 caactttcccatga 138  Q
    ||||||||||||||    
T  27271 caactttcccatga 27258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 8436574 - 8436668
Alignment:
Q  37 agagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaacttt 131  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||| ||||||||||||    
T  8436574 agagagagtggaagatagtgtaaaaaataatctaatgttgagaaagtagtataaaaatgtgttccacatttaatcaaatgcacattatcaacttt 8436668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 8440119 - 8440256
Alignment:
Q  37 agagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccat 136  Q
    |||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||| ||||||||||||  |||    
T  8440119 agagagagtgaaagatagtgtaaaaaataatctaatgttgagagagtagtataataatgtgttccacatttaatcaaatgcacattatcaactttttcat 8440218  T
Q  137 g------aaaaactccgttgacccatgctaaatgccac 168  Q
    |      |||||||||  ||||||||||||||||||||    
T  8440219 ggtgaaaaaaaactccactgacccatgctaaatgccac 8440256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 36750196 - 36750083
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatatta 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||  |||||||||| || | |||||||||||||| | || |    
T  36750196 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatgaacatga 36750097  T
Q  124 tcaactttcccatg 137  Q
    |||||||| |||||    
T  36750096 tcaacttttccatg 36750083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 45500620 - 45500512
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    |||||||||||||||||||||||||||   ||| ||||||||| |||||||| ||||| ||||||||||||| | |||||||||||||| | || |||||    
T  45500620 acatgaaagagagagggtggaagatagataaaacaataatctagtgttgagagagtagaataagaatgtgttcctcatttaatctaatggacataatcaa 45500521  T
Q  128 ctttcccat 136  Q
    |||||||||    
T  45500520 ctttcccat 45500512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 52492176 - 52492289
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatatta 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||  |||||||||| || | |||||||||||||| | || |    
T  52492176 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatggacatga 52492275  T
Q  124 tcaactttcccatg 137  Q
     ||||||| |||||    
T  52492276 acaacttttccatg 52492289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 38922892 - 38922781
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| |||| |||    
T  38922892 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggatatgatc 38922793  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  38922792 aactttcccatg 38922781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 41756331 - 41756443
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| |||||||||| |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  41756331 acatgaaagagagagtgtgaaagatagtataaaaaaataatctaatggttgagagagtatgataggaatatgttcctcatttaatctaatgaacatgatc 41756430  T
Q  126 aactttcccatga 138  Q
    |||||||||||||    
T  41756431 aactttcccatga 41756443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 36750337 - 36750447
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 126  Q
    ||||||||||||||| ||| |||||||| |||||||||||||| | ||||||| ||||  |||  ||| |||| | |||||||||||||| | || ||||    
T  36750337 acatgaaagagagagtgtgaaagatagtataaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgaacatgatca 36750436  T
Q  127 actttcccatg 137  Q
    |||||||||||    
T  36750437 actttcccatg 36750447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 45242215 - 45242103
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  45242215 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 45242116  T
Q  126 aactttcccatga 138  Q
    |||||||||||||    
T  45242115 aactttcccatga 45242103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 44686403 - 44686292
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| | || |||    
T  44686403 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatc 44686304  T
Q  126 aactttcccatg 137  Q
    ||||||| ||||    
T  44686303 aactttctcatg 44686292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 44687062 - 44687173
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||||| ||||||| ||||  ||| |||| | || | |||||||||||||| |||| |||    
T  44687062 acatgaaagagagagtgtgaaagatagtataaaaaaataatctaatggttgagagagtatgataggaatattttcctcatttaatctaatgaatatgatc 44687161  T
Q  126 aactttcccatg 137  Q
    |||||| |||||    
T  44687162 aacttttccatg 44687173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 3971801 - 3971911
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  |||  ||| |||| | |||||||||||||| |||| |||    
T  3971801 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggatatgatc 3971900  T
Q  126 aactttcccat 136  Q
    |||||||||||    
T  3971901 aactttcccat 3971911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 3998077 - 3997967
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  |||  ||| |||| | |||||||||||||| |||| |||    
T  3998077 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggatatgatc 3997978  T
Q  126 aactttcccat 136  Q
    |||||||||||    
T  3997977 aactttcccat 3997967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 38923564 - 38923675
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  |||  ||| |||| | |||||||||||||| | ||||||    
T  38923564 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgaacattatc 38923663  T
Q  126 aactttcccatg 137  Q
    |||||| |||||    
T  38923664 aacttttccatg 38923675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 45242886 - 45242997
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||| | ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||  |||| |||    
T  45242886 acatgaaagagagagtgtgaaagataatataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatagatatgatc 45242985  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  45242986 aactttcccatg 45242997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 8653622 - 8653709
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatg 116  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||| |||||||  | ||  |||||| |||||||| ||||| ||| ||||    
T  8653622 acatgaaagagagaggg-ggaagatagtgtagaaaatgatctagtgttgagggaatatgataagagtgtgtttctcatttgatcaaatg 8653709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 3971141 - 3971030
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||| | | ||||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  3971141 acatgaaagagagagtgtgaaagatagtataaaaaaataatcaagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 3971042  T
Q  126 aactttcccatg 137  Q
    |||||| |||||    
T  3971041 aacttttccatg 3971030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 19132711 - 19132822
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||  ||| |||||| | ||||||| ||||| | || |||||| ||||  |||||||| |||| | |||||||||||||| | || |||    
T  19132711 acatgaaagagagaatgtgaaagataatataaaaaaataatccagtggttgagagagtatgataagaatatgttcctcatttaatctaatggacatgatc 19132810  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  19132811 aactttcccatg 19132822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 32490094 - 32490205
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||| ||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  32490094 acatgaaagagggagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 32490193  T
Q  126 aactttcccatg 137  Q
    |||||| |||||    
T  32490194 aacttttccatg 32490205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 5035174 - 5035282
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||  |||||||||| || | |||||||||||||| | || ||    
T  5035174 agaacatgaaagagagagggtggaagatagtgtaaaacataatttagtgttgagagagtatgataagaatgtattcctcatttaatctaatggacatgat 5035273  T
Q  125 caactttcc 133  Q
    |||||||||    
T  5035274 caactttcc 5035282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 37639860 - 37639749
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| |||    
T  37639860 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatcataggaatatgttcctcatttaatctaatgaatatgatc 37639761  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  37639760 aactttcccatg 37639749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 32536857 - 32536746
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  32536857 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttccccatttaatctaatggacatgatc 32536758  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  32536757 aactttcccatg 32536746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 34992163 - 34992274
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| |||| || || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  34992163 acatgaaagagagagtgtgaaagatagtataaaaaaataatttagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 34992262  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  34992263 aactttcccatg 34992274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 38023773 - 38023661
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  |||  ||| |||| | |||||||||||||| | || |||    
T  38023773 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgaacatgatc 38023674  T
Q  126 aactttcccatga 138  Q
    |||||| ||||||    
T  38023673 aacttttccatga 38023661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 10501822 - 10501864
Alignment:
Q  36 gagagagggtggaagatagtgtaaaaaataatctaatgttgag 78  Q
    |||||||||| || ||||||||||||||||||||| |||||||    
T  10501822 gagagagggttgatgatagtgtaaaaaataatctagtgttgag 10501864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 38024430 - 38024472
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatcta 70  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||    
T  38024430 acatgaaagagagagtgtgaaagatagtataaaaaataatcta 38024472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 41859457 - 41859348
Alignment:
Q  30 atgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    ||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  ||| |||| ||||   |||||||||||| | | || |||||    
T  41859457 atgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatatgaatatgttcttcatttaatctaacggacatgatcaa 41859358  T
Q  128 ctttcccatg 137  Q
    ||||||||||    
T  41859357 ctttcccatg 41859348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 33002082 - 33001970
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||  |||||||||| || | |||||||||||||| | || ||    
T  33002082 agaacatgaaagagagagggtggaagatagtgtaaaaaataatttagtgttgagagaatatgataagaatgtattcctcatttaatctaatggacatgat 33001983  T
Q  125 caactttcccatg 137  Q
    ||||||| |||||    
T  33001982 caacttttccatg 33001970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 8204267 - 8204158
Alignment:
Q  30 atgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    ||||||||||||| ||| |||||||| ||||||| ||||||| || |||||||||||  ||| |||| |||| | |||||||||||||| | || |||||    
T  8204267 atgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagatagtatgataggaatatgttcctcatttaatctaatggacatgatcaa 8204168  T
Q  128 ctttcccatg 137  Q
    ||||||||||    
T  8204167 ctttcccatg 8204158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 33002715 - 33002826
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  33002715 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 33002814  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  33002815 aactttcccatg 33002826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 42518891 - 42518811
Alignment:
Q  37 agagagggtggaagatagtgtaaaa-aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatg 116  Q
    |||||||||| || ||||| ||||| |||||| || |||||||||||||  |||||||| |||||| ||||||||||||||    
T  42518891 agagagggtgaaaaatagtataaaacaataatttagtgttgagatagtacgataagaatttgtttctcatttaatctaatg 42518811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 15183916 - 15184027
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||  ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  15183916 acatgaaagagagagtgtgaaagatagcataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 15184015  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  15184016 aactttcccatg 15184027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 8040344 - 8040235
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | |||||||||| || | ||||||| ||||  |||||||| | || | |||||||||||||| | || |||    
T  8040344 acatgaaagagagagtgtgaaagatagtataaaaaaataatgtagtggttgagagagtatgataagaatatattcctcatttaatctaatggacatgatc 8040245  T
Q  126 aactttccca 135  Q
    ||||||||||    
T  8040244 aactttccca 8040235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 686565 - 686454
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| | ||  ||| |||| | || | |||||||||||||| | || |||    
T  686565 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagaatatgataggaatatattcctcatttaatctaatggacatgatc 686466  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  686465 aactttcccatg 686454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 687247 - 687357
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | |||||||||| || || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  687247 acatgaaagagagagtgtgaaagatagtataaaaaaataatttagtgattgagagagtatgataggaatatgttcctcatttaatctaatggacataatc 687346  T
Q  126 aactttcccat 136  Q
    |||||| ||||    
T  687347 aacttttccat 687357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 12190078 - 12190168
Alignment:
Q  48 aagatagtgtaaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 137  Q
    |||||| | ||||||||||||||||| |||||| ||||  |||  ||| |||| | |||||||||||||| | || |||||||||||||||    
T  12190078 aagataatataaaaaataatctaatgattgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatg 12190168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 15183238 - 15183126
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||| ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  |||  ||| |||| | |||||||||||||| | || |||    
T  15183238 acatgaaagtgagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatc 15183139  T
Q  126 aactttcccatga 138  Q
    ||||||| |||||    
T  15183138 aactttctcatga 15183126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 39523169 - 39523281
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||   |||  |||| || | |||||||||||||| | || ||    
T  39523169 agaacatgaaagagagagggtggaagatagtgtaaaaaataatttagtgttgagagagtatggtaaagatgtattcctcatttaatctaatggacatgat 39523268  T
Q  125 caactttcccatg 137  Q
    |||||||||||||    
T  39523269 caactttcccatg 39523281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 36451327 - 36451437
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaa-aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 126  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||| ||||| || |||||  |||||||||||||| | || ||||    
T  36451327 acatgaaagagagatggtggaagatagtgtaaaacaataatctagtgttgagagagtaggataaggatttgtttttcatttaatctaatggacataatca 36451426  T
Q  127 actttcccatg 137  Q
    ||||| |||||    
T  36451427 acttttccatg 36451437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 17648044 - 17648149
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaa-aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 126  Q
    |||||||||||||||| ||||||||||||||||| |||||| || |||||||| ||||  |||||||| | ||||  ||||||||||||| |||| ||||    
T  17648044 acatgaaagagagaggatggaagatagtgtaaaacaataatatagtgttgagagagtaagataagaatttatttcttatttaatctaatggatataatca 17648143  T
Q  127 actttc 132  Q
    ||||||    
T  17648144 actttc 17648149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 45230514 - 45230403
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| |||    
T  45230514 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgatc 45230415  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  45230414 aactttcccatg 45230403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 11806239 - 11806129
Alignment:
Q  25 agaacatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||||||  || |  ||| |||||||||||| ||| |||||||| ||||| |||| |||||||| | |||||||||||||| | || ||    
T  11806239 agaacatgaaagagagag--tgaataataatgtaaaaaataaactagtgttgagagagtaggataaaaatgtgttcctcatttaatctaatggacatgat 11806142  T
Q  125 caactttcccatg 137  Q
     ||||||||||||    
T  11806141 taactttcccatg 11806129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 9939269 - 9939161
Alignment:
Q  30 atgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    ||||||||||||  ||| |||||||| ||||||| ||||||| || |||||| ||||  |||||||| |||||| |||||||||||||| | || |||||    
T  9939269 atgaaagagagaatgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataagaatatgtttctcatttaatctaatggacatgatcaa 9939170  T
Q  128 ctttcccat 136  Q
    |||||||||    
T  9939169 ctttcccat 9939161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 21166274 - 21166386
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  21166274 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 21166373  T
Q  126 aactttcccatga 138  Q
    |||||||||||||    
T  21166374 aactttcccatga 21166386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 11417836 - 11417725
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaa-ataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| |||||| |||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  11417836 acatgaaagagagagtgtgaaagatagtataaaaatataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 11417737  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  11417736 aactttcccatg 11417725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 29651231 - 29651342
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||  |||| |||    
T  29651231 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatagatatgatc 29651330  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  29651331 aactttcccatg 29651342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 36865616 - 36865727
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||  |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| |||    
T  36865616 acatgaaagagagagtgtaaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggatatgatc 36865715  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  36865716 aactttcccatg 36865727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 25970250 - 25970144
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaa-aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 126  Q
    |||||||||||||| ||||||||||||||||||| |||||||||    ||||| ||||  ||||  || |||||| |||||||||||||| | | |||||    
T  25970250 acatgaaagagagatggtggaagatagtgtaaaacaataatcta---gtgagagagtatgataaagatttgtttctcatttaatctaatggaca-tatca 25970155  T
Q  127 actttcccatg 137  Q
    |||||||||||    
T  25970154 actttcccatg 25970144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 10424958 - 10425069
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||| | ||||||| ||||||| || |||||| ||||  ||| |||| | || | |||||||||||||| |||| |||    
T  10424958 acatgaaagagagagtgtgaaagataatataaaaaaataatctagtggttgagagagtatgataggaatatattcctcatttaatctaatggatatgatc 10425057  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  10425058 aactttcccatg 10425069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 26611182 - 26611293
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||  |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  26611182 acatgaaagagagagtgtaaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 26611281  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  26611282 aactttcccatg 26611293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 38143636 - 38143747
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  ||| |||| |||| | |||||||||||||| | || | |    
T  38143636 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgacc 38143735  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  38143736 aactttcccatg 38143747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 39522524 - 39522413
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||| ||| | | |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| |||    
T  39522524 acatgaaagagggagtgcgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggatatgatc 39522425  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  39522424 aactttcccatg 39522413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 23383457 - 23383415
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatcta 70  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  23383457 acatggaagagagagggtggaagatagtgtaaaaattaatcta 23383415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 26610495 - 26610383
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt--aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||| ||| |||||||| |  ||||||||||||| | ||||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  26610495 acatgaaagagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 26610396  T
Q  125 caactttcccatg 137  Q
    ||| |||||||||    
T  26610395 caattttcccatg 26610383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 29650564 - 29650455
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    |||||||| |||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  29650564 acatgaaaaagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 29650465  T
Q  126 aactttccca 135  Q
    ||||||||||    
T  29650464 aactttccca 29650455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 36450871 - 36450766
Alignment:
Q  34 aagagagagggtggaagatagtgtaaaa-aataatctaatgt-tgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaacttt 131  Q
    |||||||| ||||||||||||||||||| || |||||| ||| ||||| ||||| ||||  || |||| | ||||||||| |||| | || |||||||||    
T  36450871 aagagagatggtggaagatagtgtaaaacaacaatctagtgtatgagagagtaggataaagatttgttactcatttaatccaatggacataatcaacttt 36450772  T
Q  132 cccatg 137  Q
    ||||||    
T  36450771 cccatg 36450766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 10424272 - 10424165
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  |||  ||| |||| | |||||||||||||| | || |||    
T  10424272 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatc 10424173  T
Q  126 aactttcc 133  Q
    ||||||||    
T  10424172 aactttcc 10424165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 31835297 - 31835190
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaa-ataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| |||||| |||||||| | ||||||| ||||  ||| |||| |||| | | |||||||||||| | || |||    
T  31835297 acatgaaagagagagtgtgaaagatagtataaaaagataatctagtggttgagagagtatgataggaatatgttcctcgtttaatctaatggacataatc 31835198  T
Q  126 aactttcc 133  Q
    ||||||||    
T  31835197 aactttcc 31835190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 11417867 - 11417947
Alignment:
Q  58 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 137  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||||    
T  11417867 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatg 11417947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 25970701 - 25970813
Alignment:
Q  27 aacatgaaagagagagggtggaagatagtgtaaaa-aataatctaatgt-tgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    |||| |||||||||| ||||||||||||||||||| || |||||| ||| ||||| ||||| ||||  || |||| | ||||||||  |||| | || ||    
T  25970701 aacaagaaagagagatggtggaagatagtgtaaaacaacaatctagtgtatgagagagtaggataaagatttgttactcatttaattcaatggacataat 25970800  T
Q  125 caactttcccatg 137  Q
    |||||||| ||||    
T  25970801 caactttctcatg 25970813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 36864935 - 36864855
Alignment:
Q  58 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 137  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| | || |||||||||| ||||    
T  36864935 aaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatcaactttctcatg 36864855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 38694820 - 38694740
Alignment:
Q  58 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 137  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| ||||||||| |||||    
T  38694820 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgatcaacttttccatg 38694740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 22580084 - 22579973
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| |||    
T  22580084 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtgattgagagagtatgataggaatatgttcctcatttaatctaatggatatgatc 22579985  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  22579984 aactttcccatg 22579973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 33480525 - 33480638
Alignment:
Q  26 gaacatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatatta 123  Q
    ||||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  ||| |||| |||| | |||||||||||||| | || |    
T  33480525 gaacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatga 33480624  T
Q  124 tcaactttcccatg 137  Q
    ||||||||||||||    
T  33480625 tcaactttcccatg 33480638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 15082546 - 15082434
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  15082546 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 15082447  T
Q  126 aactttcccatga 138  Q
    |||||||||||||    
T  15082446 aactttcccatga 15082434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 33018316 - 33018204
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||||| ||||||| ||||  |||| ||| |||| | |||||||||||||| | || |||    
T  33018316 acatgaaagagagagtgtgaaagatagtataaaaaaataatctaatggttgagagagtatgataaaaatatgttcctcatttaatctaatggacatgatc 33018217  T
Q  126 aactttcccatga 138  Q
    |||||||| ||||    
T  33018216 aactttccaatga 33018204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 3542963 - 3542852
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  3542963 acatgaaagagagagtgtgaaagatagtttaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaacatgatc 3542864  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  3542863 aactttcccatg 3542852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 15083217 - 15083328
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  ||| |||| |||| | |||||||||||||  |||| |||    
T  15083217 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatagatatgatc 15083316  T
Q  126 aactttcccatg 137  Q
    ||||||| ||||    
T  15083317 aactttctcatg 15083328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 7193474 - 7193376
Alignment:
Q  38 gagagggtggaagatagtgtaaaaaa-taatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccat 136  Q
    ||||| ||| |||||||| ||||||| ||||||   ||||||| ||||  |||||||| |||| | |||||||||||||| | || ||||||||||||||    
T  7193474 gagagtgtgaaagatagtataaaaaaataatctg--gttgagagagtatgataagaatatgttcctcatttaatctaatggagatgatcaactttcccat 7193377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 33479846 - 33479734
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa--taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    |||||||| |||||| ||| |||||||| |||||||  ||||||| || |||||| ||||  |||  ||| |||| | |||||||||||||| | || ||    
T  33479846 acatgaaatagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgat 33479747  T
Q  125 caactttcccatg 137  Q
    |||||||||||||    
T  33479746 caactttcccatg 33479734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 3542993 - 3543073
Alignment:
Q  58 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 137  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||||    
T  3542993 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatg 3543073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 21471853 - 21471964
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| |||    
T  21471853 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggatatgatc 21471952  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  21471953 aactttcccatg 21471964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 4479603 - 4479712
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 127  Q
    |||||||||||||| | || |||||| | ||||||||||| || ||| |||| ||||  |||||||| |||| | |||||||||||||| | || || ||    
T  4479603 acatgaaagagagatgatgaaagataatataaaaaataatttagtgtggagagagtatgataagaatatgttcctcatttaatctaatggacatgattaa 4479702  T
Q  128 ctttcccatg 137  Q
    ||||||||||    
T  4479703 ctttcccatg 4479712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 38834536 - 38834428
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||||  |||| ||| |||| | |||||||||||||| | || |||    
T  38834536 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataaaaatatgttcctcatttaatctaatggacatgatc 38834437  T
Q  126 aactttccc 134  Q
    |||||||||    
T  38834436 aactttccc 38834428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 21471166 - 21471055
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgt-aaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 125  Q
    ||||||||||||||| ||| |||||||| | ||||||||||||| | | ||||| ||||  ||| |||| ||||   |||||||||||||| | || |||    
T  21471166 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggctgagagagtatgataggaatatgttcttcatttaatctaatggacatgatc 21471067  T
Q  126 aactttcccatg 137  Q
    ||||||||||||    
T  21471066 aactttcccatg 21471055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 37548116 - 37548035
Alignment:
Q  58 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatga 138  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||||||||||||||||    
T  37548116 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatga 37548035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 5457 - 5319
Alignment:
Q  37 agagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccat 136  Q
    |||||| ||||||||||   |||||||||||||| | | || | ||||| ||||||||||||||| |||||||||||||| |||| ||| ||||||| ||    
T  5457 agagagtgtggaagatatcataaaaaataatctagtatggaaagagtaggataagaatgtgtttctcatttaatctaatggatataatctactttcctat 5358  T
Q  137 -----ga-aaaactccgttgacccatgctaaatgccacc 169  Q
         || |||||| | ||||||||||||||||||||||    
T  5357 agtgggagaaaacttcattgacccatgctaaatgccacc 5319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 58 - 170
Alignment:
Q  28 acatgaaagagagagggtggaagatagtgtaaaaaa--taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 124  Q
    ||||||||||||||| ||| |||||||| |||||||  ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  58 acatgaaagagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaacataat 157  T
Q  125 caactttcccatg 137  Q
    |||||||||||||    
T  158 caactttcccatg 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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