View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_low_108 (Length: 284)
Name: NF0830_low_108
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_108 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 41690354 - 41690609
Alignment:
| Q |
1 |
atggtatggtttgtcccttatgaaccagtactgctcttgatcctttctagaagtaacctcttgtaagaaatctgcaactcctttcctttccgggcatttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41690354 |
atggtatgttttgtcccttatgaaccagtactgctcttgatcctttctagaagtaacctcttgtaagaaatctgcaactcctttcctttccgggcatttg |
41690453 |
T |
|
| Q |
101 |
aatccaacgctctcgaaaaaattgagaacgtgtacgcgaggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatg |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41690454 |
aatccaacgctctcaaaaaaattgagaacgtgttcgcgaggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatg |
41690553 |
T |
|
| Q |
201 |
tttctggtgcaggttgtaaaagagagattatcattgtaacatccatgatatgaact |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41690554 |
tttctggtgcaggttgtaaaagagagattatcattgtaacatccatgatatgaact |
41690609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 19539580 - 19539337
Alignment:
| Q |
12 |
tgtcccttatgaaccagtactgctcttgatcctttctagaagtaacctcttgtaagaaatctgcaactcctttcctttccgggcatttgaatccaacgct |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||||||| ||||||||||| || || | |
|
|
| T |
19539580 |
tgtcccttctgaaccagtactgctcttgatcctttctagaagttacctcttgtaaaaagtctgcaattcctttcctttctgggcatttgaagcccacatt |
19539481 |
T |
|
| Q |
112 |
ctcgaaaaaattgagaacgtgtacgcgaggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgca |
211 |
Q |
| |
|
| ||||||| ||||| | | |||||||| |||||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
19539480 |
ttgaaaaaaatctagaacactctccctgggaccttgatagacaatctcaccttctgaaagtaatattatgtcatcaaaaaggttgtatgtttctggtgca |
19539381 |
T |
|
| Q |
212 |
ggttgtaaaagagagattatcattgtaacatccatgatatgaac |
255 |
Q |
| |
|
||||| | ||| ||||||||||| || |||||| |||||||||| |
|
|
| T |
19539380 |
ggttgcagaagtgagattatcatagtgacatccgtgatatgaac |
19539337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 43526954 - 43527136
Alignment:
| Q |
8 |
ggtttgtcccttatgaaccagtactgctcttgatcctttctagaagtaacctcttgtaagaaatctgcaactcctttcctttccgggcatttgaatccaa |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||| ||||||||||| || | |
|
|
| T |
43526954 |
ggtttgtcccttctgaaccagtactgctcttgatcctttctagaagttacctcttgtaaaaagtctgcaa-ttctttcctttctgggcatttgaagccca |
43527052 |
T |
|
| Q |
108 |
cgctctcgaaaaaattgagaacgtgtacgcgaggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaa |
191 |
Q |
| |
|
| || | ||||||| ||||| | ||||||||||| |||||||||| |||||| |||||||| |||||| ||||||||| |
|
|
| T |
43527053 |
cactttgaaaaaaatctagaacactctcccgaggaccttgatagacaatctcaccttcggaaagtaatattatgacatcaaaaa |
43527136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 43526890 - 43526814
Alignment:
| Q |
178 |
tatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaagagagattatcattgtaacatccatgatatgaa |
254 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||| | ||| ||||||||| | ||||||||| ||||||||| |
|
|
| T |
43526890 |
tatgtcatcaaaaaggttatatgtttctggtgcaggttgcagaagtgagattatcgtagtaacatccgtgatatgaa |
43526814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 42135613 - 42135713
Alignment:
| Q |
143 |
ccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaagagagattatcattgtaacat |
242 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||| ||||||||||| || |||||||| |||||||| ||||||| |||||| || | |||||| |||| |
|
|
| T |
42135613 |
ccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctggtgctggttgtagaagagaaatcaccattgttacat |
42135712 |
T |
|
| Q |
243 |
c |
243 |
Q |
| |
|
| |
|
|
| T |
42135713 |
c |
42135713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 42175862 - 42175944
Alignment:
| Q |
140 |
ggaccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaag |
222 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| || ||||| |||||||| |||||||| |||||||| || |||||||| |
|
|
| T |
42175862 |
ggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagttcaaatgtctctggtgctggctgtaaaag |
42175944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 42156693 - 42156775
Alignment:
| Q |
143 |
ccttggtagacaatctgaccttctgaaagtaagattatgtcatcaaaaagatcaaatgtttctggtgcaggttgtaaaagaga |
225 |
Q |
| |
|
||||| || ||||| |||||||||||||||| || ||||| ||||| || |||||||| |||||||| || ||||||||||| |
|
|
| T |
42156693 |
ccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaagagttcaaatgtctctggtgctggctgtaaaagaga |
42156775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1010 times since January 2019
Visitors: 6135