View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_11 (Length: 709)
Name: NF0830_low_11
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 5674824 - 5675260
Alignment:
| Q |
1 |
atccaaatccgttaaccttctccaaactgtttgcgatagtctttgctctctcggcgccggcgatgtcgccgcgctttgtgcggaggttggcgacgccggt |
100 |
Q |
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| T |
5674824 |
atccaaatccgttaaccttctccaaactgtttgcgatagtctttgctctctcggcgccggcgatgtcgccgcgctttgtgcggaggttggcgacgccggt |
5674923 |
T |
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| Q |
101 |
gaaaatggagtgggaaagggagagaaagtttcggaaacggtaataggaggagaatgagagtgattgggagggtgtgatgaagagaattaagaaaaagaag |
200 |
Q |
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| T |
5674924 |
gaaaatggagtgggaaagggagagaaagtttcggaaacggtaataggaggagaatgagagtgattgggagggtgtgatgaagagaattaagaaaaagaag |
5675023 |
T |
|
| Q |
201 |
atgatgagggttggatttgatcgtacggttgtcatttgatctggagattcaacgctaggagattgcgaaattccactgttgtcgagtgtaaggaaatgtt |
300 |
Q |
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| T |
5675024 |
atgatgagggttggatttgatcgtacggttgtcatttgatctggagattcaacgctaggagattgcgaaattccactgttgtcgagtgtaaggaaatgtt |
5675123 |
T |
|
| Q |
301 |
caaggttgtttggattttgcgtatttcggttgggttcgggttattatggcccagaatacatttggttttcttttcttggatcgggttcctattgcaaggt |
400 |
Q |
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| T |
5675124 |
caaggttgtttggattttgcgtatttcggttgggttcgggttattatggcccagaatacattcggtttcctttttttggatcgggttcctattgcaaggt |
5675223 |
T |
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| Q |
401 |
caaatccgacaaaattctcctagctttagtactttga |
437 |
Q |
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| T |
5675224 |
caaatccgacaaaattctcctagctttagtactttga |
5675260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 512 - 578
Target Start/End: Original strand, 5675332 - 5675398
Alignment:
| Q |
512 |
tgaggaaaattatggttaattaagtttaatctcacgggtatgttatatacacatactttaacattgg |
578 |
Q |
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| T |
5675332 |
tgagggaaattatggttaattgagtttaatctcacgggtatgttatatacacatactttaacattgg |
5675398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 5676407 - 5676444
Alignment:
| Q |
660 |
tacaacttttccattatggttatcttaggggcaatatt |
697 |
Q |
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| T |
5676407 |
tacaacttttccattatggttaacttaggggcaatatt |
5676444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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