View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_110 (Length: 272)

Name: NF0830_low_110
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_110
NF0830_low_110
[»] chr4 (3 HSPs)
chr4 (28-272)||(7457466-7457710)
chr4 (67-268)||(7411426-7411627)
chr4 (60-237)||(44919554-44919731)
[»] scaffold0496 (1 HSPs)
scaffold0496 (67-268)||(2354-2555)
[»] scaffold1330 (1 HSPs)
scaffold1330 (28-268)||(1117-1357)
[»] scaffold0345 (1 HSPs)
scaffold0345 (28-268)||(4021-4261)
[»] scaffold0105 (4 HSPs)
scaffold0105 (28-268)||(34718-34958)
scaffold0105 (28-268)||(10216-10456)
scaffold0105 (28-268)||(48318-48558)
scaffold0105 (28-268)||(4134-4374)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 28 - 272
Target Start/End: Original strand, 7457466 - 7457710
Alignment:
Q  28 aattagatcaggggagctacatcagctacgatgaaaattgggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgat 127  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  7457466 aattagatcaggggagctacatcagctacgacgaaaattgggcatagaagaacattgggtttacttctcttgtgatttacttaaatgggaggcatttgat 7457565  T
Q  128 ccaaatcgtggtcgatttattcaattgcctaaaattccttgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctag 227  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7457566 ccaagtcgtggtcgatttattcaattgcctaaaattccttgtgataaagtttttatgttgtgtgataaggagtcgttggctgtcggtactgagcttctag 7457665  T
Q  228 tttttggaagggaattgatgggtcctaccattcataagtatgact 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7457666 tttttggaagggaattgatgggtcctaccattcataagtatgact 7457710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 268
Target Start/End: Original strand, 7411426 - 7411627
Alignment:
Q  67 gggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgatccaaatcgtggtcgatttattcaattgcctaaaattcct 166  Q
    |||||||| ||||||| ||||||||||||||| |||    ||| | |||||||| |||||||||||||||  |||||  || || ||||||| |||  ||    
T  7411426 gggcatagtagaacattgggtttacttctcttctgaagcccttgagtgggaggcttttgatccaaatcgtaatcgatggatgcatttgcctataatgact 7411525  T
Q  167 tgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagt 266  Q
    |||||| ||  ||||| |||||  |||| ||| ||  ||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| |||||||||||    
T  7411526 tgtgatcaatgttttacgttgtcagatagggaatcattggctgttggtactgagcttctagtctttggaaaggaattaatggctcctatcattcataagt 7411625  T
Q  267 at 268  Q
    ||    
T  7411626 at 7411627  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 44919554 - 44919731
Alignment:
Q  60 gaaaattgggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgatccaaatcgtggtcgatttattcaattgcctaa 159  Q
    ||||| |||||||||  |||||| |||||||||| ||||||||| | |||||||||||||| | |||||||||||||| ||| || || ||| |||| ||    
T  44919554 gaaaaatgggcatagtggaacattgggtttacttttcttgtgatgtccttaaatgggaggcctatgatccaaatcgtgatcggttgatgcaactgccgaa 44919653  T
Q  160 aattccttgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctagtttttggaag 237  Q
    |||   || | ||| |  ||||||| | |  || |||||||| || ||||| ||||| |||||||| |||||||||||    
T  44919654 aatgagttctaatatatgttttatgctttcagacaaggagtcactagctgttggtacggagcttcttgtttttggaag 44919731  T

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Target: scaffold0496 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 268
Target Start/End: Original strand, 2354 - 2555
Alignment:
Q  67 gggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgatccaaatcgtggtcgatttattcaattgcctaaaattcct 166  Q
    |||||||| ||||||| ||||||||||||||| |||    ||| | |||||||| |||||||||||||||  |||||  || || ||||||| |||  ||    
T  2354 gggcatagtagaacattgggtttacttctcttctgaagcccttgagtgggaggcttttgatccaaatcgtaatcgatggatgcatttgcctataatgact 2453  T
Q  167 tgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctagtttttggaagggaattgatgggtcctaccattcataagt 266  Q
    |||||| ||  ||||| |||||  |||| ||| ||  ||||||| ||||||||||||||||| ||||||| |||||| |||| ||||| |||||||||||    
T  2454 tgtgatcaatgttttacgttgtcagatagggaatcattggctgttggtactgagcttctagtctttggaaaggaattaatggctcctatcattcataagt 2553  T
Q  267 at 268  Q
    ||    
T  2554 at 2555  T

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Target: scaffold1330 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold1330
Description:

Target: scaffold1330; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 1117 - 1357
Alignment:
Q  28 aattagatcaggggagctacatcagctacgatgaaaattgggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgat 127  Q
    |||||||||||| || ||| || || ||||  |||||  |||||||| ||||||| |||| |||||||||| |||    |||||||||||||| ||||||    
T  1117 aattagatcaggagaactatataagttacggagaaaagcgggcatagtagaacattgggtgtacttctcttctgaagcccttaaatgggaggcttttgat 1216  T
Q  128 ccaaatcgtggtcgatttattcaattgcctaaaattccttgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctag 227  Q
    |||||||||  |||||  || || ||||| |||||  ||||||||  |  ||||  | ||   |||| ||| ||| ||||||| ||||||||||||||||    
T  1217 ccaaatcgtaatcgatggatacatttgccaaaaatgacttgtgatgcatgtttttcgctggcagatagggaatcgttggctgttggtactgagcttctag 1316  T
Q  228 tttttggaagggaattgatgggtcctaccattcataagtat 268  Q
    | ||||||| |||||| |||| ||||| |||||||||||||    
T  1317 tctttggaaaggaattaatggatcctatcattcataagtat 1357  T

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Target: scaffold0345 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 268
Target Start/End: Complemental strand, 4261 - 4021
Alignment:
Q  28 aattagatcaggggagctacatcagctacgatgaaaattgggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgat 127  Q
    |||||||||||| || ||| || || ||||  |||||  |||||||| ||||||| |||| |||||||||| |||    |||||||||||||| ||||||    
T  4261 aattagatcaggagaactatataagttacggagaaaagcgggcatagtagaacattgggtgtacttctcttctgaagcccttaaatgggaggcttttgat 4162  T
Q  128 ccaaatcgtggtcgatttattcaattgcctaaaattccttgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctag 227  Q
    |||||||||  |||||  || || ||||| |||||  ||||||||  |  ||||  | ||   |||| ||| ||| ||||||| ||||||||||||||||    
T  4161 ccaaatcgtaatcgatggatacatttgccaaaaatgacttgtgatgcatgtttttcgctggcagatagggaatcgttggctgttggtactgagcttctag 4062  T
Q  228 tttttggaagggaattgatgggtcctaccattcataagtat 268  Q
    | ||||||| |||||| |||| ||||| |||||||||||||    
T  4061 tctttggaaaggaattaatggatcctatcattcataagtat 4021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 34718 - 34958
Alignment:
Q  28 aattagatcaggggagctacatcagctacgatgaaaattgggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgat 127  Q
    |||||||||||| || ||| || || ||||  |||||  |||||||| ||||||| |||| |||||||||| |||    |||||||||||||| ||||||    
T  34718 aattagatcaggagaactatataagttacggagaaaagcgggcatagtagaacattgggtgtacttctcttctgaagcccttaaatgggaggcttttgat 34817  T
Q  128 ccaaatcgtggtcgatttattcaattgcctaaaattccttgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctag 227  Q
    |||||||||  |||||  || || ||||| |||||  ||||||||  |  ||||  | ||   |||| ||| ||| ||||||| ||||||||||||||||    
T  34818 ccaaatcgtaatcgatggatacatttgccaaaaatgacttgtgatgcatgtttttcgctggcagatagggaatcgttggctgttggtactgagcttctag 34917  T
Q  228 tttttggaagggaattgatgggtcctaccattcataagtat 268  Q
    | ||||||| |||||| |||| ||||| |||||||||||||    
T  34918 tctttggaaaggaattaatggatcctatcattcataagtat 34958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 268
Target Start/End: Complemental strand, 10456 - 10216
Alignment:
Q  28 aattagatcaggggagctacatcagctacgatgaaaattgggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgat 127  Q
    |||||||||||| || ||| || || ||||  |||||  |||||||| ||||||| |||  |||||||||| |||    |||||||||||||| ||||||    
T  10456 aattagatcaggagaactatataagttacggagaaaagcgggcatagtagaacattgggcgtacttctcttctgaagcccttaaatgggaggcttttgat 10357  T
Q  128 ccaaatcgtggtcgatttattcaattgcctaaaattccttgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctag 227  Q
    |||||||||  |||||  || || ||||| |||||  ||||||||  |  ||||  | ||   |||| ||| ||| ||||||| ||||||||||||||||    
T  10356 ccaaatcgtaatcgatggatacatttgccaaaaatgacttgtgatgcatgtttttcgctggcagatagggaatcgttggctgttggtactgagcttctag 10257  T
Q  228 tttttggaagggaattgatgggtcctaccattcataagtat 268  Q
    | ||||||| |||||| |||| ||||| |||||||||||||    
T  10256 tctttggaaaggaattaatggatcctatcattcataagtat 10216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 48318 - 48558
Alignment:
Q  28 aattagatcaggggagctacatcagctacgatgaaaattgggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgat 127  Q
    |||||||||||| || ||| || || ||||  |||||  |||||||| ||||||| |||  |||||||||| |||    |||||||||||||| ||||||    
T  48318 aattagatcaggagaactatataagttacggagaaaagcgggcatagtagaacattgggcgtacttctcttctgaagcccttaaatgggaggcttttgat 48417  T
Q  128 ccaaatcgtggtcgatttattcaattgcctaaaattccttgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctag 227  Q
    |||||||||  |||||  || || ||||| |||||  ||||||||  |  ||||  | ||   |||| ||| ||| ||||||| ||||||||||||||||    
T  48418 ccaaatcgtaatcgatggatacatttgccaaaaatgacttgtgatgcatgtttttcgctggcagatagggaatcgttggctgttggtactgagcttctag 48517  T
Q  228 tttttggaagggaattgatgggtcctaccattcataagtat 268  Q
    | ||||||| |||| | |||| ||||| |||||||||||||    
T  48518 tctttggaaaggaactaatggatcctatcattcataagtat 48558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 268
Target Start/End: Complemental strand, 4374 - 4134
Alignment:
Q  28 aattagatcaggggagctacatcagctacgatgaaaattgggcatagaagaacatcgggtttacttctcttgtgatctacttaaatgggaggcatttgat 127  Q
    |||||||||||| || ||| || || ||||  |||||  |||||||| ||||||| |||| |||||||||| |||    |||||||||||||| ||||||    
T  4374 aattagatcaggagaactatataagttacggagaaaagcgggcatagtagaacattgggtgtacttctcttctgaagcccttaaatgggaggcttttgat 4275  T
Q  128 ccaaatcgtggtcgatttattcaattgcctaaaattccttgtgataaagtttttatgttgtgtgataaggagtcgctggctgtcggtactgagcttctag 227  Q
    |||||||||  |||||  || || || || |||||  ||||||||  |  ||||  | ||   |||| ||| ||  | ||||| ||||||||||||||||    
T  4274 ccaaatcgtaatcgatggatacattttccaaaaatgacttgtgatgcatgtttttcgctggcggatagggaatcatttgctgttggtactgagcttctag 4175  T
Q  228 tttttggaagggaattgatgggtcctaccattcataagtat 268  Q
    | ||||||| |||||| |||| ||||| |||||||||||||    
T  4174 tctttggaaaggaattaatggatcctatcattcataagtat 4134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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