View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_116 (Length: 256)
Name: NF0830_low_116
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_116 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 6073210 - 6073436
Alignment:
| Q |
30 |
gttgattatttgctttgtaataatactaattaattatactacattggtgataagaataaggtaatctgcatcctaaggtctaaacataacaaatatattg |
129 |
Q |
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| T |
6073210 |
gttgattatttgctttgtaataatactaattaattatactacattggtgataagaatagggtaatctgtatcctaaggtctagacacaacaaatatattg |
6073309 |
T |
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| Q |
130 |
ttctagaccggaggatgcagattatccaatcctcatccaatatctctttattatgaaagcaatgaactaataaagtttattgaaatggttatgtctagtt |
229 |
Q |
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| T |
6073310 |
ttttagaccgcaggatgcagattatccaatccttacccaatatctctttattatgaaagcaatgaactaataaagtttattgaaatagttatgtctagtt |
6073409 |
T |
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| Q |
230 |
ttcttaattgataacaaagatgtaatc |
256 |
Q |
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| T |
6073410 |
ttcttaattgataacaaagatgtaatc |
6073436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 6068744 - 6068962
Alignment:
| Q |
30 |
gttgattatttgctttgtaataatactaattaattatactacattggtgataagaataaggtaatctgcatcctaaggtctaaacataacaaatatattg |
129 |
Q |
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| T |
6068744 |
gttgattatttgtttcataataataccgattaattattctacattggtgataagaatgaggtaatctgcatcctaaggtctagacacaacaaatatattg |
6068843 |
T |
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| Q |
130 |
ttctagaccggaggatgcagattatccaatcctcatccaatatctctttattatgaaagcaatgaactaataaagtt--tattgaaatggttatgtctag |
227 |
Q |
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| T |
6068844 |
ttctagacctcaggatgcagattatccaattctcacccaatagctct---ttataaaagcaatgaattaataaagtttatattgaaatgatcatgtccgg |
6068940 |
T |
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| Q |
228 |
ttttcttaattgataacaaaga |
249 |
Q |
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| T |
6068941 |
ttttcttaattggtaataaaga |
6068962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 16164 - 16310
Alignment:
| Q |
34 |
attatttgctttgtaataatactaattaattatactacattggtgataagaataaggtaatctgcatcctaaggtctaaacataacaaatatattgttct |
133 |
Q |
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| T |
16164 |
attatttgcttcgtaataatactgattaattattcaacattggtgataagaatgaggtaatcttcattctaaggattagacacaacaaatatattgttct |
16263 |
T |
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| Q |
134 |
agaccggaggatgcagattatccaatcctcatccaatatctctttat |
180 |
Q |
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| T |
16264 |
agacctcagaatgcagattatccaatcctcacccaatagttctttat |
16310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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