View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_117 (Length: 256)

Name: NF0830_low_117
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_117
NF0830_low_117
[»] chr2 (1 HSPs)
chr2 (1-228)||(34012366-34012593)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 34012366 - 34012593
Alignment:
Q  1 caagaggaaaatgggctgaagaatggaatagagtatttcttttggtgtgtgcaatggggttatttgtggacccacttttcttctatgcaatctctataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34012366 caagaggaaaatgggctgaagaatggaatagagtatttcttttggtgtgtgcaatggggttatttgtggacccacttttcttctatgcaatctctataag 34012465  T
Q  101 tgacacgtgtatgtgtctatttatagatggttggtttctagttaccgtcaccgttatccgttgcatgacggacatgttacatctctggaatatttggttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34012466 tgacacgtgtatgtgtctatttatagatggttggtttctagttaccgtcaccgttatccgttgcatgacggacatgttacatctctggaatatttggttg 34012565  T
Q  201 cagttttatattcataaacataaacgct 228  Q
    ||||||||||||||||||||||||||||    
T  34012566 cagttttatattcataaacataaacgct 34012593  T

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