View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_118 (Length: 254)

Name: NF0830_low_118
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_118
NF0830_low_118
[»] chr7 (1 HSPs)
chr7 (75-160)||(24766377-24766462)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 24766377 - 24766462
Alignment:
75 tgatgtttaagatttgtctaagcctccagaattggttttgggttcatatgttgcaagtttttcaacttttgtttcataagtattat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24766377 tgatgtttaagatttgtctaagcctccagaattggttttgggttcatatgttgcaagtttttcaacttttgtttcataagtattat 24766462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2161 times since January 2019
Visitors: 6159