View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_122 (Length: 251)
Name: NF0830_low_122
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_122 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 3235028 - 3234789
Alignment:
| Q |
5 |
caagtataccacaagtcttcagttttctttcagtcacaagtccccatcattcacaaatgaacaatactttataataatctttattgatacagactccacc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3235028 |
caagtataccacaagtcttcagttttctttcagtcacaagtccccatcattcacaaatgaacaatactttataataatctttattaatacagactccacc |
3234929 |
T |
|
| Q |
105 |
aagaaaaactcacttatctacagagaaaaacaattagctaagtgtttcatataaactttaaaggttcttcccattaatttcaccttcacttctcccacaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3234928 |
aagaaaaactcacttatctacagagaaaaacaattagctaagtgtttcatataaactttaaaggttcttcccattaatttcaccttcacttctcccacaa |
3234829 |
T |
|
| Q |
205 |
aaatatgtatgtattaagcaggaaagatccattcatctca |
244 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
3234828 |
aaatatgtatgtattaagcaggaaagatccattcagctca |
3234789 |
T |
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