View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_123 (Length: 251)
Name: NF0830_low_123
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_123 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 5985905 - 5986010
Alignment:
| Q |
2 |
taagcatttgactcaagtaatcatcattgatgtatgcaacgactactttctccaaagaaggaaagtttattctaacttaaaaggaat-aaaactccttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5985905 |
taagcatttgactcaagtaatcatcattgatgtatgcaacgactactttctccaaagaaggaaagtttattctaacttaaaaggaataaaaactccttaa |
5986004 |
T |
|
| Q |
101 |
taaaca |
106 |
Q |
| |
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|||||| |
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| T |
5986005 |
taaaca |
5986010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 5986006 - 5986047
Alignment:
| Q |
181 |
aaacaaggatttattttcatcaacaatcatctacttatctct |
222 |
Q |
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| T |
5986006 |
aaacaaggatttattttcatcaacaatcatctacttatctct |
5986047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 19531650 - 19531553
Alignment:
| Q |
5 |
gcatttgactcaagtaatcatcattgatgtatgcaacgactactttctccaaagaaggaaagtttattctaacttaaa---aggaataaaactccttaa |
100 |
Q |
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| T |
19531650 |
gcatttgactcaagtaatcatcattgatgtatgcaacaactattttctc-aaagaatgaaagtttattctaactttagcataggaataaaactccttaa |
19531553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 9022939 - 9022835
Alignment:
| Q |
3 |
aagcatttgactcaagtaatcatcattgatgtatgcaacgactactttctcca---aagaaggaaagtttattctaactta---aaaggaataaaactcc |
96 |
Q |
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| T |
9022939 |
aagcaattgactcaagtaatcatcattgatgtatgcaatgactattttctccacgaattaaggaaagtttattttgacttacgaaagggaataaaactcc |
9022840 |
T |
|
| Q |
97 |
ttaat |
101 |
Q |
| |
|
||||| |
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|
| T |
9022839 |
ttaat |
9022835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 9021483 - 9021419
Alignment:
| Q |
118 |
attgaatgattgaagcgctgtccttaaatcttcaagatatctcaacattcattcaaacattcaaa |
182 |
Q |
| |
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||||||||| ||||| |||| ||| |||||| |||||||||| | ||||||||||||||| |||| |
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| T |
9021483 |
attgaatgactgaagtgctgacctcaaatctccaagatatcttagcattcattcaaacatccaaa |
9021419 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 9828657 - 9828558
Alignment:
| Q |
117 |
aattgaatgattgaagcgctgtccttaaa-tcttcaagatatctcaacattcattcaaacattcaaa-acaaggatttattttcatcaacaatcatctac |
214 |
Q |
| |
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|||||||||||||||||| || ||| || ||| || |||||||||||||||||||| |||||||| ||| ||||| |||||||||| ||||||||| |
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|
| T |
9828657 |
aattgaatgattgaagcgttgacctccaactctccatgatatctcaacattcattcaggcattcaaagacatggatt--ttttcatcaatgatcatctac |
9828560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 12796623 - 12796584
Alignment:
| Q |
143 |
aaatcttcaagatatctcaacattcattcaaacattcaaa |
182 |
Q |
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|||||| |||||||||||||||||||||||| |||||||| |
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| T |
12796623 |
aaatctccaagatatctcaacattcattcaagcattcaaa |
12796584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 17230717 - 17230648
Alignment:
| Q |
9 |
ttgactcaagtaatcatcattgatgtatgcaacgactactttctccaaagaaggaaagtttattctaactta |
80 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||| | |||| |||||||||||||||||| ||||||| |
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| T |
17230717 |
ttgactcaagtaatt-tcattgatgtatgccacaactagtatctc-aaagaaggaaagtttattataactta |
17230648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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