View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_124 (Length: 251)
Name: NF0830_low_124
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_124 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 47818415 - 47818588
Alignment:
| Q |
8 |
cagcacagacaagacaatgatctccagatgcaagtaattgtccttttcttggttcattattatttttctcaaaatatttaaaagacgaaaagttatatgt |
107 |
Q |
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| T |
47818415 |
cagcccagacaagacaatgatctccagatgcaagtaattgtccttttcttggttcatta---tttttctcaaaatatttaaaagacgaaaagttatatgt |
47818511 |
T |
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| Q |
108 |
tccctatttttgttttcaaggaagcc-ttatttttatatttaaaagatgcctctaaattttcataggcataggctca |
183 |
Q |
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| T |
47818512 |
tccctatttttgttttcaaggaagcctttatttttatatttaaaagatgcctctaaattttcataggcataggctca |
47818588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 30901386 - 30901451
Alignment:
| Q |
186 |
tggcatttagggtgggtgaaggcaagagtttcctaccaaaggaaagttcttttgaaccattagatt |
251 |
Q |
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| T |
30901386 |
tggcatttagggtgggtgagggcaagagtttcctaccataggaaagttcttttgaaccattagatt |
30901451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 30902219 - 30902182
Alignment:
| Q |
186 |
tggcatttagggtgggtgaaggcaagagtttcctacca |
223 |
Q |
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| T |
30902219 |
tggcatttagggtgggtgagggaaagagtttcctacca |
30902182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 44992865 - 44992930
Alignment:
| Q |
186 |
tggcatttagggtgggtgaaggcaagagtttcctaccaaaggaaagttcttttgaaccattagatt |
251 |
Q |
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| T |
44992865 |
tggcatttagggtggttgagggcaagagtttcctaccataggaaagttcttttgaaccattagatt |
44992930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 44993799 - 44993762
Alignment:
| Q |
186 |
tggcatttagggtgggtgaaggcaagagtttcctacca |
223 |
Q |
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| T |
44993799 |
tggcatttagggtgggtgagggaaagagtttcctacca |
44993762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 36662639 - 36662607
Alignment:
| Q |
186 |
tggcatttagggtgggtgaaggcaagagtttcc |
218 |
Q |
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| T |
36662639 |
tggcatttagggtgggtgaagggaagagtttcc |
36662607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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