View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_127 (Length: 250)
Name: NF0830_low_127
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_127 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 2821635 - 2821875
Alignment:
| Q |
2 |
attagtttataaccttataagattatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatccctg |
101 |
Q |
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| T |
2821635 |
attagtttataaccttataagagcatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatccctg |
2821734 |
T |
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| Q |
102 |
taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
2821735 |
taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattcttatctttaa |
2821834 |
T |
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| Q |
202 |
aattccacaacttcaacaaaggtcttgtatagtttcatctc |
242 |
Q |
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| T |
2821835 |
aatcccacaacttcaacaaaggtcttgtatagtttcatctc |
2821875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 48196786 - 48196871
Alignment:
| Q |
102 |
taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc |
187 |
Q |
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| T |
48196786 |
taaacagggattagggtttagtcttttgtatcaacctactatcgagtcaatataaataatattccaggttcttattattttctctc |
48196871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 46574483 - 46574573
Alignment:
| Q |
129 |
gtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaaca |
219 |
Q |
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| T |
46574483 |
gtatcaaagtactattcagtcagtatcaatactattcaaggttcttattatcatctcttattcttttatctaaattctcacaacttcaaca |
46574573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 23539739 - 23539823
Alignment:
| Q |
102 |
taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc |
187 |
Q |
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| T |
23539739 |
taaatagggattagggtttagccttttggatcaagctactatcaagtca-tatcaataatattcaaaggtcttattattttctctc |
23539823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 40569674 - 40569804
Alignment:
| Q |
57 |
tattatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatca |
156 |
Q |
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|||| |||||||||||||||||| | |||| | || |||| || |||||||||||| | || || ||| ||||||| |||| || || |||||||| |
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| T |
40569674 |
tattttgatttgttcttgatttaggattgagtccgtgtatcgctataaatagggattagaattgagttttttgtatcaagctactattcagccagtatca |
40569773 |
T |
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| Q |
157 |
ataacatt-caaggttcttattattttctct |
186 |
Q |
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| T |
40569774 |
ataacattccgaggttcttattattttctct |
40569804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 16398052 - 16397967
Alignment:
| Q |
102 |
taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc |
187 |
Q |
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|||||||||||| || ||||| |||||| ||||| |||| || | | |||||||| || |||||||||| ||||||||||||||| |
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| T |
16398052 |
taaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattcaaggtttttattattttctctc |
16397967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 10723853 - 10723775
Alignment:
| Q |
142 |
atcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaacaa |
220 |
Q |
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| T |
10723853 |
atcaagttattatcaataatattcaaagttcttattattttctctcgtccatttatctaaaattgcacaatttcaacaa |
10723775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 32103 - 32200
Alignment:
| Q |
60 |
tatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaa |
157 |
Q |
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|||||||||||||||||| | | |||| | | | ||||||| |||||||||||| || || || ||| ||||||| |||| ||||||||| |||||| |
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| T |
32103 |
tatgatttgttcttgattcatgattgagtctatgtatccctataaatagggattagtattcagttttttgtatcaacctactatcaagtcattatcaa |
32200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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