View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_134 (Length: 238)

Name: NF0830_low_134
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_134
NF0830_low_134
[»] chr3 (15 HSPs)
chr3 (14-220)||(29751773-29751979)
chr3 (58-219)||(29712903-29713064)
chr3 (58-219)||(29746951-29747112)
chr3 (67-199)||(30201116-30201248)
chr3 (58-198)||(29648978-29649118)
chr3 (58-199)||(30227291-30227432)
chr3 (74-153)||(30214708-30214787)
chr3 (154-202)||(29698819-29698867)
chr3 (58-162)||(30223077-30223181)
chr3 (58-203)||(29721032-29721177)
chr3 (58-135)||(30230345-30230422)
chr3 (58-162)||(29856826-29856930)
chr3 (67-108)||(30239068-30239109)
chr3 (67-99)||(36328108-36328140)
chr3 (67-99)||(36333947-36333979)
[»] chr8 (2 HSPs)
chr8 (58-223)||(1152920-1153085)
chr8 (67-140)||(38284465-38284538)
[»] chr6 (2 HSPs)
chr6 (59-199)||(5569421-5569561)
chr6 (75-199)||(5574415-5574539)
[»] chr1 (2 HSPs)
chr1 (67-200)||(16955670-16955803)
chr1 (67-156)||(16966188-16966277)
[»] chr5 (1 HSPs)
chr5 (58-108)||(11634998-11635048)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 29751979 - 29751773
Alignment:
Q  14 atcttctccaaacgcaaaggattgctgaaatcaccggtcatcttaatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacat 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29751979 atcttgtccaaacgcaaaggattgctgaaatcaccggtcatcttaatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacat 29751880  T
Q  114 tacgtgcacttgtcacaatttcaacagtatcaagtctttggagtatgttcttcgtcaggtcttttggaagttcaagccagtttggctttgtcatgcactc 213  Q
    ||||||||||||||||||||||||| |||||||||||  | ||||||||||| |||| |||  |||||||||||| ||||||||||||||||||||||||    
T  29751879 tacgtgcacttgtcacaatttcaacggtatcaagtctccgaagtatgttctttgtcaagtcaattggaagttcaatccagtttggctttgtcatgcactc 29751780  T
Q  214 aactttc 220  Q
    |||||||    
T  29751779 aactttc 29751773  T

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Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 58 - 219
Target Start/End: Complemental strand, 29713064 - 29712903
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagt 157  Q
    |||||||| |||||| ||||||||||||||||  |||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29713064 aatggtacgccacattagaggatccttgcaaatattccgccacaaagaacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagt 29712965  T
Q  158 atgttcttcgtcaggtcttttggaagttcaagccagtttggctttgtcatgcactcaacttt 219  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||||| ||| |||| ||||    
T  29712964 atgttcttcatcaggtctattggaagttcaagccaatttggctttgtcgtgctctcaccttt 29712903  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 29746951 - 29747112
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagt 157  Q
    |||||||| |||||| ||||| |||| |||||  |||| ||| | |||||||||||| ||||||||||||||||| |||| |||| ||||||| || |||    
T  29746951 aatggtacgccacattagagggtcctggcaaattttccgccacaaaggacaaacattgcgtgcacttgtcacaatatcaatagtaccaagtctctgaagt 29747050  T
Q  158 atgttcttcgtcaggtcttttggaagttcaagccagtttggctttgtcatgcactcaacttt 219  Q
    |||||||| |||| | || | ||||||||||||||||||||||||||| |||  ||||||||    
T  29747051 atgttctttgtcaagcctatcggaagttcaagccagtttggctttgtcgtgctatcaacttt 29747112  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 30201248 - 30201116
Alignment:
Q  67 ccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagtatgttcttc 166  Q
    ||||||||||||||||||||||| ||||||||| |||||||| || | || ||||||||||||||||||||  |||  ||| ||||| || ||||| |      
T  30201248 ccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaagaatgttttct 30201149  T
Q  167 gtcaggtcttttggaagttcaagccagtttggc 199  Q
    || | |||||| |||||||||||||| ||||||    
T  30201148 gtaatgtctttaggaagttcaagccaatttggc 30201116  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 29649118 - 29648978
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagt 157  Q
    |||||||| |||||||||||||||||| |||| ||||||| | |||||||| ||    | |||| |||| ||||||||||||||||||| || ||| ||     
T  29649118 aatggtacgccacatgagaggatccttacaaatgttccacgatagaggacatactaggcatgcatttgttacaatttcaacagtatcaactccttgaagg 29649019  T
Q  158 atgttcttcgtcaggtcttttggaagttcaagccagtttgg 198  Q
    |||||  | || | |||| |||||||||||||||| |||||    
T  29649018 atgttaattgtgatgtctcttggaagttcaagccaatttgg 29648978  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 30227432 - 30227291
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagt 157  Q
    |||||| | ||||||||||||||||||||||| ||||||| | |||||||| || | || ||||||||||||||| || |  ||| |||| ||||| ||     
T  30227432 aatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaaga 30227333  T
Q  158 atgttcttcgtcaggtcttttggaagttcaagccagtttggc 199  Q
    |||||  | || | |||| | |||||||||||||| ||||||    
T  30227332 atgtttgttgtgatgtctctaggaagttcaagccaatttggc 30227291  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 30214787 - 30214708
Alignment:
Q  74 agaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttg 153  Q
    |||||||||||||||| ||||||||| |||||||| || | || ||||||||||||||| ||||  ||| ||||||||||    
T  30214787 agaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatctcaatggtaccaagtctttg 30214708  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 29698867 - 29698819
Alignment:
Q  154 gagtatgttcttcgtcaggtcttttggaagttcaagccagtttggcttt 202  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  29698867 gagtatgttcttcgtcaattctattggaagttcaagccagtttggcttt 29698819  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 30223181 - 30223077
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagt 157  Q
    |||||| | ||||||||||||||||||||||| ||||||||||  |||||| ||||| |||||  |  ||| ||||||||| | | |||| ||||||||     
T  30223181 aatggtgcgccacatgagaggatccttgcaaatgttccaccaataaggacacacattgcgtgccttcttcagaatttcaactggaccaagcctttggaga 30223082  T
Q  158 atgtt 162  Q
    |||||    
T  30223081 atgtt 30223077  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 203
Target Start/End: Complemental strand, 29721177 - 29721032
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagt 157  Q
    |||||| | ||||||| |||  || ||||||| ||||||||||  |||||| ||||| |||||| | ||||  ||||| |  |  ||||| ||| |||||    
T  29721177 aatggtgcgccacatgcgagagtctttgcaaatgttccaccaataaggacacacatttcgtgcagtcgtcaggatttcgaaggagtcaagccttgggagt 29721078  T
Q  158 atgttcttcgtcaggtcttttggaagttcaagccagtttggctttg 203  Q
    |||||  | || |||||| |||||||||||||||| ||||||||||    
T  29721077 atgttggttgtaaggtctcttggaagttcaagccaatttggctttg 29721032  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 30230422 - 30230345
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttc 135  Q
    |||||| | ||||||| ||||||||||||||| | ||||||||  |||||| ||||| |||||| |||||| ||||||    
T  30230422 aatggtgcgccacatgcgaggatccttgcaaatgctccaccaataaggacacacattgcgtgcatttgtcaaaatttc 30230345  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 29856930 - 29856826
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagt 157  Q
    |||||||| ||||| ||||||||| || || | || |||||| ||||||||||| | || ||||||| |||| |||||||  |||||||| ||||| ||     
T  29856930 aatggtacgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacatgcacttttcacgatttcaattgtatcaagcctttgaagg 29856831  T
Q  158 atgtt 162  Q
    |||||    
T  29856830 atgtt 29856826  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 30239109 - 30239068
Alignment:
Q  67 ccacatgagaggatccttgcaaacgttccaccaaagaggaca 108  Q
    ||||||||||||||||||||| | ||||||||| ||||||||    
T  30239109 ccacatgagaggatccttgcatatgttccaccatagaggaca 30239068  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 36328108 - 36328140
Alignment:
Q  67 ccacatgagaggatccttgcaaacgttccacca 99  Q
    |||||||| ||||||||||||||||||||||||    
T  36328108 ccacatgacaggatccttgcaaacgttccacca 36328140  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 36333947 - 36333979
Alignment:
Q  67 ccacatgagaggatccttgcaaacgttccacca 99  Q
    ||||||||||||||||||||||| |||||||||    
T  36333947 ccacatgagaggatccttgcaaatgttccacca 36333979  T

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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 1152920 - 1153085
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagt 157  Q
    |||||||| |||||| |||||||||||||||| || |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||     
T  1152920 aatggtacgccacattagaggatccttgcaaatgtgccaccacagaggacaaacattacgtgcacttgttacaatttcaacagtatccagtctttgaagg 1153019  T
Q  158 atgttcttcgtcaggtcttttggaagttcaagccagtttggctttgtcatgcactcaactttcgct 223  Q
    |||||| |  ||| |||| ||||||||| |||||| ||||| ||| |  ||| |||||||||||||    
T  1153020 atgttccttatcaagtctattggaagttgaagccaatttggatttcttgtgctctcaactttcgct 1153085  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 38284538 - 38284465
Alignment:
Q  67 ccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacag 140  Q
    |||||||| |||||| ||||||| ||||||||||   ||||| ||||| |||||| |||| | |||||||||||    
T  38284538 ccacatgaaaggatctttgcaaatgttccaccaatacggacacacattgcgtgcatttgtaagaatttcaacag 38284465  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 199
Target Start/End: Original strand, 5569421 - 5569561
Alignment:
Q  59 atggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagta 158  Q
    ||||||| |||||  |||||||||||||||| ||||||||| |||||||| || | || ||||||||| || |  |||| ||||||||| ||||| || |    
T  5569421 atggtacgccacacaagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaagga 5569520  T
Q  159 tgttcttcgtcaggtcttttggaagttcaagccagtttggc 199  Q
    |||||  ||| | |||| |||||||| ||||||| ||||||    
T  5569521 tgttcaccgtgatgtctcttggaagtgcaagccaatttggc 5569561  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 5574415 - 5574539
Alignment:
Q  75 gaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagtatgttcttcgtcaggtc 174  Q
    ||||||||||||||| ||||||||| |||||||| || | || ||||||||| || |  |||| ||||||||| ||||| || ||||||  ||| | |||    
T  5574415 gaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaaggatgttcaccgtgatgtc 5574514  T
Q  175 ttttggaagttcaagccagtttggc 199  Q
    | |||||||| ||||||| ||||||    
T  5574515 tcttggaagtgcaagccaatttggc 5574539  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 16955670 - 16955803
Alignment:
Q  67 ccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagtatgttcttc 166  Q
    |||||||||||||||||||||||  |||||||| | ||| || || | || | ||||||| |||||||||| ||||||||| || ||||| |||||  |     
T  16955670 ccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgtttatt 16955769  T
Q  167 gtcaggtcttttggaagttcaagccagtttggct 200  Q
    | ||  |||||||| ||||||||||| |||||||    
T  16955770 gccaaatcttttggtagttcaagccaatttggct 16955803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 16966188 - 16966277
Alignment:
Q  67 ccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggag 156  Q
    ||||||| |||||||||||||||  |||||||| | |||||| || | || | ||||||| || ||||||| ||||||||| || |||||    
T  16966188 ccacatgtgaggatccttgcaaatattccaccataaaggacacacttgacatacacttgtgactatttcaatagtatcaagcctctggag 16966277  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 11635048 - 11634998
Alignment:
Q  58 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggaca 108  Q
    |||||||| ||||||||||||||||||||| | | ||||||| ||||||||    
T  11635048 aatggtacgccacatgagaggatccttgcatatgctccaccatagaggaca 11634998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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