View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_136 (Length: 234)

Name: NF0830_low_136
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_136
NF0830_low_136
[»] chr4 (3 HSPs)
chr4 (1-130)||(1326348-1326477)
chr4 (4-124)||(4875943-4876063)
chr4 (4-59)||(44185407-44185462)
[»] chr3 (1 HSPs)
chr3 (7-125)||(5387538-5387656)
[»] scaffold0831 (1 HSPs)
scaffold0831 (24-124)||(2128-2228)
[»] chr8 (10 HSPs)
chr8 (51-115)||(26531509-26531573)
chr8 (56-123)||(27183114-27183181)
chr8 (56-123)||(27231104-27231171)
chr8 (86-124)||(12646273-12646311)
chr8 (16-124)||(12651335-12651443)
chr8 (16-124)||(18081331-18081439)
chr8 (20-124)||(18095540-18095644)
chr8 (16-124)||(18140263-18140371)
chr8 (20-115)||(12721475-12721570)
chr8 (68-115)||(31135858-31135905)
[»] chr1 (1 HSPs)
chr1 (56-124)||(51869152-51869220)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 1326348 - 1326477
Alignment:
Q  1 cactagctatattgccgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctctt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  1326348 cactagctatattgctgatgacatttccttctctattctttccaaattacctctcaaatctctcaaacgatttacgtgtgcatgcaaaccatagtctctt 1326447  T
Q  101 ttatttcaaaacccttatttcatgcctatg 130  Q
    ||||||||||||||||||||||||||||||    
T  1326448 ttatttcaaaacccttatttcatgcctatg 1326477  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 4875943 - 4876063
Alignment:
Q  4 tagctatattgccgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctctttta 103  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||| ||||| | |||| ||| ||||||||||    
T  4875943 tagctatattcccgatgacatttccttttctattctttccaaattacccctccaatctctcaattgatttacatgtgcctccaaatcatcgtctctttta 4876042  T
Q  104 tttcaaaacccttatttcatg 124  Q
    |||||||||||| ||||||||    
T  4876043 tttcaaaaccctaatttcatg 4876063  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 44185407 - 44185462
Alignment:
Q  4 tagctatattgccgatgacatttccttctctattctttccaaattacccctcaaat 59  Q
    |||||||||| | ||||| ||||| || ||||||||||||||||||||||||||||    
T  44185407 tagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaat 44185462  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 5387538 - 5387656
Alignment:
Q  7 ctatattgccgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttattt 106  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||| | |||||||||||||||    
T  5387538 ctatatttccgatgacatttccttttctattctttccaaattacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttattt 5387637  T
Q  107 caaaacccttatttcatgc 125  Q
    ||||||||| |||||||||    
T  5387638 caaaaccctaatttcatgc 5387656  T

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Target: scaffold0831 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 2228 - 2128
Alignment:
Q  24 tttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatttcat 123  Q
    ||||||||  |||| | |||||| |||| || ||||||||||| |||||||| |||||||||||  ||||||||||||||||| || | ||| |||||||    
T  2228 tttccttcgttattttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcat 2129  T
Q  124 g 124  Q
    |    
T  2128 g 2128  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 26531509 - 26531573
Alignment:
Q  51 ccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 115  Q
    |||||||||||||||| || ||||| ||||| |||||| ||||||||||||||||| ||||||||    
T  26531509 ccctcaaatctctcaagcggtttacttgtgcgtgcaaatcatggtctcttttatttgaaaaccct 26531573  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 27183114 - 27183181
Alignment:
Q  56 aaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatttcat 123  Q
    ||||||||||| |||||||| ||||  | |||| |||||||||||||||||||||||||| |||||||    
T  27183114 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcat 27183181  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 27231171 - 27231104
Alignment:
Q  56 aaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatttcat 123  Q
    ||||||||||| |||||||| ||||  | |||| |||||||||||||||||||||||||| |||||||    
T  27231171 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcat 27231104  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 12646273 - 12646311
Alignment:
Q  86 aaaccatggtctcttttatttcaaaacccttatttcatg 124  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  12646273 aaaccatggtctcttttatttcaaaaccctcatttcatg 12646311  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 12651335 - 12651443
Alignment:
Q  16 cgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 115  Q
    ||||||| || | |||||||| || |||||||| || || |||||||||| |||| | || |||||    |||  |||||||||||||||||||||||||    
T  12651335 cgatgacgttgctttctctatactctccaaattgcctcttaaatctctcacacgactcacctgtgctaagaaataatggtctcttttatttcaaaaccct 12651434  T
Q  116 tatttcatg 124  Q
     ||||||||    
T  12651435 catttcatg 12651443  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 18081331 - 18081439
Alignment:
Q  16 cgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 115  Q
    |||||||||| | ||||| |||||||| ||||||||   ||||||||||| ||| || || |||||    ||| ||||||||||| | ||||||||||||    
T  18081331 cgatgacattgctttctccattctttctaaattaccttacaaatctctcacacgtttcacttgtgctaaaaaatcatggtctcttctttttcaaaaccct 18081430  T
Q  116 tatttcatg 124  Q
     ||||||||    
T  18081431 aatttcatg 18081439  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 18095540 - 18095644
Alignment:
Q  20 gacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatt 119  Q
    |||||| | ||||| ||||| ||||||||||| |||||||| |||||||| || || |||||   |||| ||||||| ||| | || ||||||||| |||    
T  18095540 gacattgctttctccattctctccaaattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtcacttcttttccaaaaccctaatt 18095639  T
Q  120 tcatg 124  Q
    |||||    
T  18095640 tcatg 18095644  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 18140371 - 18140263
Alignment:
Q  16 cgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 115  Q
    |||||||||| | ||||| ||||| || ||||| ||  | |||||||||||||| ||||| |||||    ||| ||||||| |||||||| |||||||||    
T  18140371 cgatgacattgctttctccattctctctaaattgcctattaaatctctcaaacgttttacctgtgctaaaaaatcatggtcacttttattccaaaaccct 18140272  T
Q  116 tatttcatg 124  Q
     ||||||||    
T  18140271 aatttcatg 18140263  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 12721475 - 12721570
Alignment:
Q  20 gacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 115  Q
    |||||| | ||||||||||| |||||||| || || ||||||||||||||||| || ||||     ||| |||||| ||||||||| |||||||||    
T  12721475 gacattgctttctctattctctccaaattgccgcttaaatctctcaaacgattcacttgtgttaaaaaatcatggtttcttttattccaaaaccct 12721570  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 31135905 - 31135858
Alignment:
Q  68 cgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 115  Q
    |||||| | |||| ||||||||||||||||||||||||| ||||||||    
T  31135905 cgatttgcatgtgtatgcaaaccatggtctcttttatttgaaaaccct 31135858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 51869152 - 51869220
Alignment:
Q  56 aaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatttcatg 124  Q
    |||||| | |||||||||   ||||||| ||||||||||||||| |||||| || ||||| ||||||||    
T  51869152 aaatctttgaaacgatttggatgtgcatacaaaccatggtctctcttatttgaagaccctcatttcatg 51869220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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