View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_14 (Length: 675)
Name: NF0830_low_14
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 50 - 665
Target Start/End: Original strand, 52856114 - 52856729
Alignment:
| Q |
50 |
tttacatatttatttatcactagaagggggatggaaagtgaagggaaaacatactcccatttaggcacaacatctttgttccatataccctgtaggtttg |
149 |
Q |
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| T |
52856114 |
tttacatatttatttatcactagaagggggatggaaagtgaagggaaaacatactcccatttaggcacaacatctttgttccatataccctgtaggtttg |
52856213 |
T |
|
| Q |
150 |
ccacctgagttctgggacgtgaacaagcaattagcagatatctaccgtattgaaacaaaagctccacaaaggaaggatcttcatcattttgaaatgattt |
249 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52856214 |
ccacctgagttccgggacgtgaacaagcaattagcagatatctaccgtattgaaacaaaagctccacaaaggaaggatcttcatcattttgaaatgattt |
52856313 |
T |
|
| Q |
250 |
gattctcgatgaagttggaacaatatcaccacctctcaattgagatatgttagtttgacaagaaaccattttcccttcgtccaaaataggttttcctaaa |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52856314 |
gattctcgatgaagttggaacaatatcaccacctctcaattgagatatgttagtttgacaagaaaccattttcccttcgtccaaaataggttttcctaaa |
52856413 |
T |
|
| Q |
350 |
gcagtcttcgaacttttagagagttgcaatgagacccgatgaaatagattttgatagtcatccaagtgacgagcataaatatcatcatattttaagcttt |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52856414 |
acagtcttcgaacttttagagagttgcaatgagacccgatgaaatagattttgatagtcatccaagtgacgagcataaatatcatcatattttaagcttg |
52856513 |
T |
|
| Q |
450 |
tcacaaacttcattttactcaaggactcggaagcaagatcttttttagagttttcaggattagtaaatggaccatcaaacgacgaggaagctgtcagaag |
549 |
Q |
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| T |
52856514 |
tcacaaacttcattttactcaaggactcggaagtaagatctttcttagagttttcaggattagtaaatggaccatcaaacgacgaggaagctgtcagaag |
52856613 |
T |
|
| Q |
550 |
caaaatagcccaatctgaaccttcaactctaagcttcttatcatccaaaacatgtataactccattttcattactgatctacacatcaagaactgcagaa |
649 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
52856614 |
caaaatagcccaatctgaaccttcaactctaagcttcttatcatccaaaacatgtataactcctttttcattactgatctgcacatcaagaactgcagaa |
52856713 |
T |
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| Q |
650 |
aactgaattccctttg |
665 |
Q |
| |
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|||||||||||||||| |
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| T |
52856714 |
aactgaattccctttg |
52856729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 78 - 660
Target Start/End: Original strand, 48486954 - 48487533
Alignment:
| Q |
78 |
ggatggaaagtgaagggaaaacatactcccatttaggcacaacatctttgttccatataccctgtaggtttgccacctgagttctgggacgtgaacaagc |
177 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48486954 |
ggatgaaaagagaagggaaaacatactcccatgcaggtgcaactttattgttccatataccctgtaggtttgccacctgagttccaggacgtgaacaagc |
48487053 |
T |
|
| Q |
178 |
aattagcagatatctaccgtattgaaacaaaagctccacaaaggaaggatcttcatcattttgaaatgatttgattctcgatgaagttggaacaatatca |
277 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| | | |
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| T |
48487054 |
aattagcagatatcgaccatattgaaacaaaagttccacaaaggaaggatcttcatcattttgaaacgaattgactctcgatgaagttggaacagcagaa |
48487153 |
T |
|
| Q |
278 |
ccacctctcaattgagatatgttagtttgacaagaaaccattttcccttcgtccaaaataggttttcctaaagcagtcttcgaacttttagagagttgca |
377 |
Q |
| |
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|||||| ||||||||| ||||||||||||| |||||||| ||| ||| ||||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
48487154 |
tcacctcccaattgagagatgttagtttgaccagaaaccaattt---ttcatccaaaataggttttcctaaaaccgtcttggaacttttagagagttgca |
48487250 |
T |
|
| Q |
378 |
atgagacccgatgaaatagattttgatagtcatccaagtgacgagcataaatatcatcatattttaagcttttcacaaacttcattttactcaaggactc |
477 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||||||| || | |||||||||||||||||||| |
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| T |
48487251 |
atgagacccgatgaaatagattctgatagtcatccaagtgacgtgcgtaaatatcatcatatgaaaagctttttgcagatttcattttactcaaggactc |
48487350 |
T |
|
| Q |
478 |
ggaagcaagatcttttttagagttttcaggattagtaaatggaccatcaaacgacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaact |
577 |
Q |
| |
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| || | |||| || || |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487351 |
agtagtaggatccttctttgagtcttcaggattagtaaatggaccatcaaaggacgaggaagctgtcagaagcaaaatagcccaatctgaaccttcaact |
48487450 |
T |
|
| Q |
578 |
ctaagcttcttatcatccaaaacatgtataactccattttcattactgatctacacatcaagaactgcagaaaactgaattcc |
660 |
Q |
| |
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|||| |||||| || || |||||||||||||| || || |||||||| |||| || ||||||||||||| ||||||||||||| |
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| T |
48487451 |
ctaaacttcttgtcgtctaaaacatgtataacacctttgtcattactaatctgcatatcaagaactgcacaaaactgaattcc |
48487533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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