View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_144 (Length: 210)

Name: NF0830_low_144
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_144
NF0830_low_144
[»] chr3 (22 HSPs)
chr3 (7-127)||(10430909-10431027)
chr3 (1-127)||(10666618-10666742)
chr3 (1-161)||(9852926-9853084)
chr3 (12-161)||(11772283-11772429)
chr3 (1-123)||(9980553-9980673)
chr3 (1-123)||(10035090-10035210)
chr3 (1-127)||(10520568-10520692)
chr3 (1-128)||(9841940-9842065)
chr3 (12-161)||(11778856-11779002)
chr3 (1-123)||(10263788-10263908)
chr3 (7-161)||(10360669-10360821)
chr3 (7-128)||(10372779-10372898)
chr3 (7-123)||(10583669-10583783)
chr3 (59-128)||(10092077-10092146)
chr3 (59-128)||(10198959-10199028)
chr3 (64-128)||(10130004-10130068)
chr3 (1-117)||(10503744-10503857)
chr3 (58-123)||(10531868-10531933)
chr3 (33-112)||(10086273-10086352)
chr3 (33-112)||(10193193-10193272)
chr3 (58-123)||(10680666-10680731)
chr3 (48-95)||(8585531-8585578)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-123)||(54464-54584)
[»] chr2 (1 HSPs)
chr2 (49-123)||(26909975-26910049)
[»] chr4 (1 HSPs)
chr4 (33-154)||(17849815-17849936)
[»] chr8 (1 HSPs)
chr8 (33-112)||(44954552-44954631)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 10430909 - 10431027
Alignment:
Q  7 aaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatac 106  Q
    ||||||||||||||||||| || || ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10430909 aaactggaacacaacttgt-ct-atcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatac 10431006  T
Q  107 ctttctactaacaatggacat 127  Q
    |||||| ||||||||||||||    
T  10431007 ctttcttctaacaatggacat 10431027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 10666742 - 10666618
Alignment:
Q  1 tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt 100  Q
    |||||||||| ||||||||||| || || || |||||||||||| || ||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  10666742 tacctgaaacaggaacacaactcgt-ct-atcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttcctt 10666645  T
Q  101 ttatacctttctactaacaatggacat 127  Q
    |||||||||||| ||||||||||||||    
T  10666644 ttatacctttcttctaacaatggacat 10666618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 9853084 - 9852926
Alignment:
Q  1 tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt 100  Q
    |||||||||  |||||||||||||| || || ||||||| || | ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||    
T  9853084 tacctgaaatgggaacacaacttgt-ct-atcatattgtaacctggtcatttatttctatgacagggatgtgagcaattttggaccaatgttccttcctt 9852987  T
Q  101 ttatacctttctactaacaatggacatctaaaaatgactagttgcttaagagagtcaggga 161  Q
    |||||||||||| ||||||||||||||| | ||||| | |||  ||| || ||||||||||    
T  9852986 ttatacctttcttctaacaatggacatccataaatgtccagtctcttcagtgagtcaggga 9852926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 11772429 - 11772283
Alignment:
Q  12 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttc 111  Q
    |||||||| |||||||||||   ||||||||||  |||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  11772429 ggaacacagcttgttctcat---attgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttc 11772333  T
Q  112 tactaacaatggacatctaaaaatgactagttgcttaagagagtcaggga 161  Q
    | |||||||||| ||||   |||||   ||||||||||||||||| ||||    
T  11772332 ttctaacaatgggcatccccaaatggtcagttgcttaagagagtcgggga 11772283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 9980673 - 9980553
Alignment:
Q  1 tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt 100  Q
    |||||||||  |||||||||||||| || || |||||||||||| || ||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  9980673 tacctgaaatgggaacacaacttgt-ct-atcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttcctt 9980576  T
Q  101 ttatacctttctactaacaatgg 123  Q
    |||||||||||| ||||||||||    
T  9980575 ttatacctttcttctaacaatgg 9980553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10035210 - 10035090
Alignment:
Q  1 tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt 100  Q
    |||||||||  |||||||||||||| || || ||||||||||||| | |||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  10035210 tacctgaaatgggaacacaacttgt-ct-atcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattttggaccaatgttccttcctt 10035113  T
Q  101 ttatacctttctactaacaatgg 123  Q
    |||||||||||| ||||||||||    
T  10035112 ttatacctttcttctaacaatgg 10035090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 10520692 - 10520568
Alignment:
Q  1 tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt 100  Q
    |||||||||  |||||||||||||| || || |||||||||||| || ||||||  ||||||| ||||||||||||||||||||||| ||||||||||||    
T  10520692 tacctgaaatgggaacacaacttgt-ct-atcatattgtgacttggtaatttattgatatgactgggatgtgagcaattttggaccaatgttccttcctt 10520595  T
Q  101 ttatacctttctactaacaatggacat 127  Q
    |||||||||||| ||||||||||||||    
T  10520594 ttatacctttcttctaacaatggacat 10520568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 9842065 - 9841940
Alignment:
Q  1 tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt 100  Q
    |||||||||| |||||||||||||| || || ||||| |||||| ||  |||||  |||||||||||||||||||||||||||| || ||||||||||||    
T  9842065 tacctgaaacgggaacacaacttgt-ct-atcatattctgacttggtggtttatccatatgacagggatgtgagcaattttggagcaatgttccttcctt 9841968  T
Q  101 ttatacctttctactaacaatggacatc 128  Q
    |||||||||||| |||||||||||||||    
T  9841967 ttatacctttcttctaacaatggacatc 9841940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 11778856 - 11779002
Alignment:
Q  12 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttc 111  Q
    |||||||| |||||||||||   ||||||||||  |||||||| | |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  11778856 ggaacacagcttgttctcat---attgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttc 11778952  T
Q  112 tactaacaatggacatctaaaaatgactagttgcttaagagagtcaggga 161  Q
    | |||||||||| ||||   |||||   ||||||||||||||||| ||||    
T  11778953 ttctaacaatgggcatccccaaatggtcagttgcttaagagagtcgggga 11779002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10263908 - 10263788
Alignment:
Q  1 tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt 100  Q
    |||||||||  |||||||||||||| || || ||||||||||||| ||||||||   ||||| |||||||||||||||||||||| | ||||||||||||    
T  10263908 tacctgaaatgggaacacaacttgt-ct-atcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttggactaatgttccttcctt 10263811  T
Q  101 ttatacctttctactaacaatgg 123  Q
    |||||||||||| ||||||||||    
T  10263810 ttatacctttcttctaacaatgg 10263788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 10360669 - 10360821
Alignment:
Q  7 aaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatac 106  Q
    |||| |||||||||||||| || || |||||||||||| ||| ||||| | |||||| |||||||||||||||||||| || ||||||||||||||||||    
T  10360669 aaacgggaacacaacttgt-ct-atcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgttccttccttttatac 10360766  T
Q  107 ctttctactaacaatggacatctaaaaatgactagttgcttaagagagtcaggga 161  Q
    |||||| |||||||||| ||   | | ||| | |||| |||||||||||||||||    
T  10360767 ctttcttctaacaatgggcaatcatagatgtccagttccttaagagagtcaggga 10360821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 10372779 - 10372898
Alignment:
Q  7 aaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatac 106  Q
    |||| |||||||||||||| || || ||||||||| || ||| ||||| | |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  10372779 aaacgggaacacaacttgt-ct-atcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgttccttccttttatac 10372876  T
Q  107 ctttctactaacaatggacatc 128  Q
    |||||| |||||||||| ||||    
T  10372877 ctttcttctaacaatgggcatc 10372898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 10583783 - 10583669
Alignment:
Q  7 aaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatac 106  Q
    |||| |||||||||||||| || || |||||||||||| || |||||| | |||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  10583783 aaacgggaacacaacttgt-ct-atcatattgtgactttgtgatttatttgtatgacagggatgtgagcaattttggaccaatattcattccttttatac 10583686  T
Q  107 ctttctactaacaatgg 123  Q
    |||||| ||||||||||    
T  10583685 ctttcttctaacaatgg 10583669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 10092146 - 10092077
Alignment:
Q  59 atgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatggacatc 128  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  10092146 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatc 10092077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 10199028 - 10198959
Alignment:
Q  59 atgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatggacatc 128  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  10199028 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatc 10198959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 10130068 - 10130004
Alignment:
Q  64 agggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatggacatc 128  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||    
T  10130068 agggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatggacatc 10130004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10503857 - 10503744
Alignment:
Q  1 tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt 100  Q
    |||||||||| |||||||| | ||| |||||   ||||||||||   ||| ||| | ||||||||||||||||| |||||||||||| ||||||||||||    
T  10503857 tacctgaaacgggaacacagcctgtcctcat---attgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgttccttcctt 10503761  T
Q  101 ttatacctttctactaa 117  Q
    |||||||||||| ||||    
T  10503760 ttatacctttcttctaa 10503744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 10531933 - 10531868
Alignment:
Q  58 tatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatgg 123  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||||||||||    
T  10531933 tatgacagggatgtgagaaattttggaccaattttccttccttttatacctttcttctaacaatgg 10531868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 10086352 - 10086273
Alignment:
Q  33 atattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttct 112  Q
    ||||||||| |||| ||||||| | ||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||    
T  10086352 atattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttct 10086273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 10193272 - 10193193
Alignment:
Q  33 atattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttct 112  Q
    ||||||||| |||| ||||||| | ||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||    
T  10193272 atattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttct 10193193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 10680731 - 10680666
Alignment:
Q  58 tatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatgg 123  Q
    ||||||||||||||||| |||||||||||  ||||| |||||||||||||||||| ||||||||||    
T  10680731 tatgacagggatgtgagaaattttggaccgatgttcattccttttatacctttcttctaacaatgg 10680666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 8585531 - 8585578
Alignment:
Q  48 catttatatatatgacagggatgtgagcaattttggaccactgttcct 95  Q
    ||||||||| ||||||||| ||||||||||| |||||||| |||||||    
T  8585531 catttatatttatgacaggtatgtgagcaatgttggaccaatgttcct 8585578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 54464 - 54584
Alignment:
Q  1 tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt 100  Q
    |||||||||  |||||||||||||| || || |||||||||||| || ||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  54464 tacctgaaatgggaacacaacttgt-ct-atcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttcctt 54561  T
Q  101 ttatacctttctactaacaatgg 123  Q
    |||||||||||| ||||||||||    
T  54562 ttatacctttcttctaacaatgg 54584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 26910049 - 26909975
Alignment:
Q  49 atttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatgg 123  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  26910049 atttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttgtacctttcttctaacaatgg 26909975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 17849815 - 17849936
Alignment:
Q  33 atattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatggacatctaaa 132  Q
    |||||||||||| ||| |  || | |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |  || ||||   |    
T  17849815 atattgtgacttggtcctcaatttctatgacagggatgtgagcaattttggaccaatgttcctgccttttatacctttcttctaatatagggcatcgcca 17849914  T
Q  133 aatgactagttgcttaagagag 154  Q
    |||||| ||| |||||||||||    
T  17849915 aatgaccagtcgcttaagagag 17849936  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 44954552 - 44954631
Alignment:
Q  33 atattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttct 112  Q
    |||||||||||| | ||| ||| | ||||||| | || | ||||||||||||||| |||||||||||| |||||||||||    
T  44954552 atattgtgacttggccatctatttctatgacatgaattttagcaattttggaccaatgttccttccttctatacctttct 44954631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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