View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_2 (Length: 805)
Name: NF0830_low_2
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 5 - 436
Target Start/End: Original strand, 21838612 - 21839043
Alignment:
| Q |
5 |
gagtgagatgaacatatgtaatatctaggaaatgttgagagataggattgtaaaaatttccatatttttcatcagaactctagctgccaaagaaaataca |
104 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
21838612 |
gagtgatatgaacatatgtaatatctaggaaatgttgagagataggattgtaaaaatttccatattttttatcagaactctagctgccaaaggaaataca |
21838711 |
T |
|
| Q |
105 |
aaaccgagtttatgcatatttgattttaaccgttcaatttcaaattaacagtcgaaatcgtgtagcaacatgatttttcttacaagtgaaaccccggttt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
21838712 |
aaaccgagtttatgcatatttgattttaaccgttcaatttcaaattaacagtcgaaatcgtgtaacagcatgatttttcttacaagtgaaaccccggttt |
21838811 |
T |
|
| Q |
205 |
accctgcattattgctcttagagtctgctcaaatgcacttatacctactgaccacatgtagtctattcgcatataattggtttcctcagtattgtattat |
304 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
21838812 |
accctgcattattgttcttagagtctgctcaaatgcacttatacctactgaccacatgtagtctattcgcatataattgttttcctcagtattgtattct |
21838911 |
T |
|
| Q |
305 |
gtatcaactcacgtttataattgtaatctttccttattgcgttagttgtttttaggaaatgttttacaatgtgctgaatttgtgaaaaggatttcgcaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21838912 |
gtatcaactcacgtttataattgtaatctttccttattgcgttagttgtttttaggaaatgttttacaatgtgctgaatttgtgaaaaggatttcgcaaa |
21839011 |
T |
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| Q |
405 |
tcaannnnnnnncattacacaaagtgcaacat |
436 |
Q |
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|||| |||||||||||||||||||| |
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| T |
21839012 |
tcaattttttttcattacacaaagtgcaacat |
21839043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 456 - 776
Target Start/End: Original strand, 21839067 - 21839386
Alignment:
| Q |
456 |
gtagcattaaccagcagctagctaatgggggcttctctagaacaaaactgagattcaatgtaagtatgttaagaaaaatacaaaagaatcgagtttcgaa |
555 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |
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| T |
21839067 |
gtagcattaaccagcagctagctaatgggg-cttctctagaacaaaactgagattcaatgtaagtaggttaagaaaaatataaaagaaccgagtttcgaa |
21839165 |
T |
|
| Q |
556 |
ctatggtcgagttgactcgatttattgtcggtcctagatgaaatcctttgttatttaaactttataatcgtaaaactacaattttagcctaacatcctca |
655 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21839166 |
ctatggtcgagttgactcgatttattgtcggtcctagatgaaatcctttgttatttcaactttataatcgtaaaactacaattttagcctaacatcctca |
21839265 |
T |
|
| Q |
656 |
cacacagcagcattctcactctatctcctcttcttctctttctttgtctgacagttgcagccacataaaaataaatgtgattcacgtgatagcttgcaaa |
755 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21839266 |
cacacagcagcatcctcactctatctcctcttcttctctttctttgtctgacagttgcagccacataaaaataaatgtgattcacgtggtagcttgcaaa |
21839365 |
T |
|
| Q |
756 |
ctcacggtagattccttgttc |
776 |
Q |
| |
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| ||| ||||||||||||||| |
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| T |
21839366 |
cacacagtagattccttgttc |
21839386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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