View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_22 (Length: 614)
Name: NF0830_low_22
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 53 - 601
Target Start/End: Original strand, 29333495 - 29334033
Alignment:
| Q |
53 |
taatgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaagcaatgaaagatcgttggatt |
152 |
Q |
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| T |
29333495 |
taatgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaagcgatgaaagatcgttggatt |
29333594 |
T |
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| Q |
153 |
gaagaatcgtttcgacgtgttgttgaagttcgaagccatggaggagtgattcgtcttggttttcttcgatgcgtcttcgtttgttgactatttcttccaa |
252 |
Q |
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| T |
29333595 |
gaagaatcgttgcgacgtgttgttgaagttcgaagccatggaggagtgattcgtcttggttttcttcgatgcgtcttcgtttgttgactatttcttccaa |
29333694 |
T |
|
| Q |
253 |
gtagttgcgcggtggcgggtttatatccggttcgaaagggttgcgaagtgaagattctagtggtggaggt---ggcggcggtggcggagatgtgacggag |
349 |
Q |
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| T |
29333695 |
gtagttgcgcggtggcgggtttatatccggttcgaaagggttgcgaagggaagattctagcggtggaggtggcggcggcggtggtggagaggtgacggag |
29333794 |
T |
|
| Q |
350 |
gcggaagtggaggttcggtggcggtttttggagggaaaagtgaatttcagtttcattctgttatggcggcgttccacgtcagcttttctgttgaatttta |
449 |
Q |
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| T |
29333795 |
gcggaagtggaggttcggtggcggtttttggagggaaaagtgaatttcagtttcattctgttatggcggcgttccacgtcagcttttctgttgaatttta |
29333894 |
T |
|
| Q |
450 |
gaagaaagacagtggcagtattgtaatttgtgaagaagggtttttctcttattatatagggttaatgggggttaatgtagtggcagtaaaaacccgttac |
549 |
Q |
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| T |
29333895 |
gaagaaagacagtggcagtattgtaatttgtgaagaagggtttttctcttattatata----------gggttaatgtagtggcagtaaaaacccgt--- |
29333981 |
T |
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| Q |
550 |
tcagttctgtctggtcaaagttgttatttgcgactagttacttgagctcttc |
601 |
Q |
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| T |
29333982 |
tcagttctgtctagtcaaagttgttatttgcgggtggttacttgagctcttc |
29334033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 29322419 - 29322533
Alignment:
| Q |
168 |
cgtgttgttgaagttcgaagccatggaggagtgattcgtcttggttttcttcgatgcgtcttcgtttgttgactatttcttccaagtagttgcgcggtgg |
267 |
Q |
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|||||| |||||||| || ||| |||| |||||||| |||||||| | ||||||||| |||| ||||| | |||||||||||||| |||||| |||| |
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| T |
29322419 |
cgtgttcttgaagttggaggccgtggatgagtgatttatcttggttgtgttcgatgcgccttctcttgttcattatttcttccaagtgattgcgcagtgg |
29322518 |
T |
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| Q |
268 |
cgggtttatatccgg |
282 |
Q |
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|||||||||||||| |
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| T |
29322519 |
tgggtttatatccgg |
29322533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 29305205 - 29305285
Alignment:
| Q |
143 |
tcgttggattgaagaatcgtttcgacgtgttgttgaagttcgaagccatggaggagtgattcgtcttggttttcttcgatg |
223 |
Q |
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| T |
29305205 |
tcgttggataggagaaacctttcggcgtgttgtcgaagttcgaagccgtggatgagtgatctgtcttggttttcttcgatg |
29305285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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