View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_24 (Length: 588)
Name: NF0830_low_24
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_24 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 99 - 588
Target Start/End: Complemental strand, 43879417 - 43878935
Alignment:
| Q |
99 |
aacaaactcaaactcttcaacatacatactagttgaagtaaaatatatagaagtcacacnnnnnnntggtgaaagtaaaacagatttcattcatatacac |
198 |
Q |
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| T |
43879417 |
aacaaactcaaactcttcaacatacatactagttgaagtaaaata----gaagtcacacaaaaaaatggtgaaagtaaaacagatttcattcatatacac |
43879322 |
T |
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| Q |
199 |
cacaagaattaagatttatattattatctacaacctgattgatccaaatcttccctttgactttgatcgtttgatgctgacagaggattgtgaaacagac |
298 |
Q |
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| T |
43879321 |
cacaagaattaagatttatattat---ctacaacctgattgatccaaatcttccctttgactttgatcgtttgatgctgacagaggattgtgaaacagac |
43879225 |
T |
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| Q |
299 |
aattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagta |
398 |
Q |
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| T |
43879224 |
aattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagta |
43879125 |
T |
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| Q |
399 |
cttgttcaacatcacctgaatcattcatctccaattccttcatcttcaatgccaattcattaacacatgaatcattcttcttattccctttgtctttttt |
498 |
Q |
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| T |
43879124 |
cttgttcaacatcacctgaatcattcatctccaattccttcatcttcaatgccaattcattaacacatgaatcattcttcttattccctttgtctttttt |
43879025 |
T |
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| Q |
499 |
ctctttcactccattttctggactaatttgtttcacaaaactcacatgnnnnnnnncaatacttgcagcatcttcctttgcttcttctct |
588 |
Q |
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| T |
43879024 |
ctctttcactccattttctggactaatttgtttcacaaaactcacatgttttttttcaatacttgcagcatcttccattgttttttctct |
43878935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 318 - 445
Target Start/End: Original strand, 7574 - 7701
Alignment:
| Q |
318 |
tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctga |
417 |
Q |
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| T |
7574 |
tgaaaaacctgttcacaatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctga |
7673 |
T |
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| Q |
418 |
atcattcatctccaattccttcatcttc |
445 |
Q |
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| T |
7674 |
atccatcatatctaattccttcatcttc |
7701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 445
Target Start/End: Original strand, 13158 - 13285
Alignment:
| Q |
318 |
tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctga |
417 |
Q |
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| T |
13158 |
tgaaaaacctgtccacaatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctga |
13257 |
T |
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| Q |
418 |
atcattcatctccaattccttcatcttc |
445 |
Q |
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| T |
13258 |
ttccatcatatccattttcttcatcttc |
13285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 1894073 - 1894015
Alignment:
| Q |
188 |
ttcatatacaccacaagaattaagatttatattattatctacaacctgattgatccaaat |
247 |
Q |
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| T |
1894073 |
ttcatatacaccacaagaattaagatttatgcta-tatctacaacctggttgatctaaat |
1894015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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