View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_28 (Length: 535)

Name: NF0830_low_28
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_28
NF0830_low_28
[»] scaffold1163 (1 HSPs)
scaffold1163 (109-535)||(1013-1427)
[»] scaffold0043 (6 HSPs)
scaffold0043 (282-535)||(29296-29550)
scaffold0043 (282-535)||(44154-44408)
scaffold0043 (447-535)||(50850-50938)
scaffold0043 (318-379)||(50734-50795)
scaffold0043 (322-388)||(31250-31316)
scaffold0043 (321-378)||(46119-46176)
[»] chr2 (1 HSPs)
chr2 (42-535)||(22395609-22396084)
[»] chr3 (18 HSPs)
chr3 (38-535)||(27387532-27388026)
chr3 (185-398)||(26631470-26631682)
chr3 (444-535)||(26631346-26631437)
chr3 (445-531)||(28085664-28085750)
chr3 (313-408)||(27380751-27380846)
chr3 (131-287)||(19482064-19482221)
chr3 (447-535)||(27350750-27350838)
chr3 (313-408)||(19478162-19478257)
chr3 (42-92)||(19481978-19482028)
chr3 (42-92)||(27382979-27383029)
chr3 (231-413)||(28085769-28085953)
chr3 (445-535)||(28006577-28006667)
chr3 (318-379)||(27350893-27350954)
chr3 (318-379)||(27981195-27981256)
chr3 (315-379)||(26632323-26632387)
chr3 (445-532)||(26632184-26632271)
chr3 (318-408)||(28006691-28006781)
chr3 (321-389)||(19482255-19482323)
[»] chr5 (1 HSPs)
chr5 (447-535)||(6164269-6164357)
[»] scaffold1805 (2 HSPs)
scaffold1805 (313-408)||(23-118)
scaffold1805 (177-252)||(183-259)


Alignment Details
Target: scaffold1163 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 109 - 535
Target Start/End: Complemental strand, 1427 - 1013
Alignment:
Q  109 gataaaaagaagatgcaactttgggactaggaaaatcaatgcacaagagaataatattgcaatacagttgcctcaataaagaccttacttgtaaaattca 208  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||| ||||||| |||||||  ||    
T  1427 gataaaaagaagatgcaactttgggactaggaaaatcaattcacaagggaataatattgtaatacagttgcctcattaaaaaccttacctgtaaaaccca 1328  T
Q  209 atgggataaaaccaggc-atggaaaaaagagcgcattactaaacatacataaacaaaacgacattaacaaacaccataatcacaccctaacctatttttg 307  Q
    |||||| |||| ||||  | ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |    
T  1327 atgggacaaaagcaggtgaaggaaaaaagagcgcagtactaaacatacataaacaaaacaacattaacaaacaccataatcaaaccctaacctattttcg 1228  T
Q  308 tgtcgggttccttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacct 407  Q
    ||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || | ||| ||| ||||||||||||||    
T  1227 tgtggggttccttcctaaaatgtaggaaacgaagactttaaattagaaaagccttctgttgccaaattcctcgcacgctcagcttctcttaagtcgacct 1128  T
Q  408 cagttgttcactactgacttgtgttgtgtggaagaatattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcac 507  Q
    | |||| |  | |            |||  |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1127 cggttgat-gcaa------------gtgctgaagcaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgaacatcac 1041  T
Q  508 atttgttcactactgccttcaaatcatc 535  Q
    ||||||| ||||||| ||||||||||||    
T  1040 atttgtttactactgacttcaaatcatc 1013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 282 - 535
Target Start/End: Complemental strand, 29550 - 29296
Alignment:
Q  282 cataatcacaccctaacctattttt-gtgtcgggttccttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcc 380  Q
    |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||     
T  29550 cataatcacaacctaacctattttttgtgtggggttccttcctaaaatgtaggaaacgaagactttaaattagaaaagccttctgttgccaaattcctcg 29451  T
Q  381 caagttcaacttttcttaagtcgacctcagttgttcactactgacttgtgttgtgtggaagaatattctttactttgttgtgcccactcactgcattcag 480  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  29450 caagttcagcttttcttaagtcgacctcagttgttcactactgacttctgttgcgtggaagaaaattctttactttgttgtgcccactcactgcattcag 29351  T
Q  481 cgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29350 cgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 29296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 282 - 535
Target Start/End: Complemental strand, 44408 - 44154
Alignment:
Q  282 cataatcacaccctaacctattttt-gtgtcgggttccttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcc 380  Q
    |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||      
T  44408 cataatcacatcctaacctattttttgtgtggggttccttcctaaaatgtaggaaacgaagactttaaattagaaaagctttctgttgccaaattccttg 44309  T
Q  381 caagttcaacttttcttaagtcgacctcagttgttcactactgacttgtgttgtgtggaagaatattctttactttgttgtgcccactcactgcattcag 480  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  44308 caagttcagcttttcttaagtcgacctcagttgttcactactgacttctgttgcgtggaagaaaattctttactttgttgtgcccactcactgcattcag 44209  T
Q  481 cgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44208 cgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 44154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 447 - 535
Target Start/End: Original strand, 50850 - 50938
Alignment:
Q  447 tctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 535  Q
    ||||| |||||||||||||| ||| |||||||||| |||||||  | |||||| |||| ||||||||||||||||| ||||||||||||    
T  50850 tctttgctttgttgtgcccattcagtgcattcagccttcaacttctgcttctgaacataacatttgttcactactgacttcaaatcatc 50938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 50734 - 50795
Alignment:
Q  318 cttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctc 379  Q
    ||||||||| ||||||||| ||||  |||| ||||| |||||||||||||||||||||||||    
T  50734 cttcctaaattgtaggaaaggaagattttaaattagcaaagccttctgttgccaaattcctc 50795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 31316 - 31250
Alignment:
Q  322 ctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaagttca 388  Q
    ||||||||||||||||||||  |||| ||| | |||||||||| |||||||| ||||| || |||||    
T  31316 ctaaaatgtaggaaacgaagattttaaatttgcaaagccttcttttgccaaagtcctcgcacgttca 31250  T

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Target: scaffold0043; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 46176 - 46119
Alignment:
Q  321 cctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcct 378  Q
    |||||||||||||||||||||  |||| ||| | |||||||||| |||||||| ||||    
T  46176 cctaaaatgtaggaaacgaagattttaaatttgcaaagccttcttttgccaaagtcct 46119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 42 - 535
Target Start/End: Complemental strand, 22396084 - 22395609
Alignment:
Q  42 tgttggcacctcaatcctaccacctatcatctagagcactccaataataattnnnnnnnnnnnnnnngataaaaagaagatgcaactttgggactaggaa 141  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||                  ||||||||||||||| |||||||||||||||||    
T  22396084 tgttggcacctcaatcctaccacctatcgtccagagcactccaataata------tcattaaaagaagataaaaagaagatgtaactttgggactaggaa 22395991  T
Q  142 aatcaatgcacaagagaataatattgcaatacagttgcctcaataaagaccttacttgtaaaattcaatgggataaaaccagg-catggaaaaaagagcg 240  Q
    ||||||| |||||| ||||||||||| ||||||||| ||||| |||| |||| || |||||||  |||||||| |||||||||  | |||||||||||||    
T  22395990 aatcaattcacaagggaataatattgtaatacagttccctcattaaaaacctaacctgtaaaacccaatgggacaaaaccaggtgaaggaaaaaagagcg 22395891  T
Q  241 cattactaaacatacataaacaaaacgacattaacaaacaccataatcacaccctaacctatttttgtgtcgggttccttcctaaaatgtaggaaacgaa 340  Q
    || ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||  | ||||||||||||||||||||||||||    
T  22395890 cagtactaaacatacataaacaaaacaacattagcaaacaccataatcacaccctaaccaattttcgtgtgtgcttccttcctaaaatgtaggaaacgaa 22395791  T
Q  341 ggctttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctcagttgttcactactgacttgtgttgtgtggaa 440  Q
    | ||||| ||||||||||||||||| ||||||||||||| || ||||| ||| ||||||||| ||||| |||| |  | |            |||  |||    
T  22395790 gactttaaattagaaaagccttctgctgccaaattcctcgcacgttcagcttctcttaagtcaacctcggttgat-gcaa------------gtgcagaa 22395704  T
Q  441 gaatattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 535  Q
    | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  22395703 gcaaattctttactttgttgtgcccactcactgcattcagtgttcaactcttccttctgaacatcacatttgttcactactgacttcaaatcatc 22395609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 6e-94; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 38 - 535
Target Start/End: Original strand, 27387532 - 27388026
Alignment:
Q  38 actctgttggcacctcaatcctaccacctatcatctagagcactccaataataat---tnnnnnnnnnnnnnnngataaaaagaaga-tgcaactttggg 133  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |   |               ||||||||||||| ||||||||||||    
T  27387532 actctattggcacctcaatcctaccacctatcgtctagagcactccaataatattatttttttaaaaaaaaaaagataaaaagaagaatgcaactttggg 27387631  T
Q  134 actaggaaaa---tcaatgcacaagagaataatattgcaatacagttgcctcaataaagaccttacttgtaaaattcaatgggataaaaccaggc-atgg 229  Q
    |   ||||||   |||||||||||| ||||||||||| ||||||||||||||| |||| ||||||| |||||||  |||||||||||||||||   | ||    
T  27387632 aagtggaaaaatatcaatgcacaagggaataatattgtaatacagttgcctcattaaaaaccttacctgtaaaacccaatgggataaaaccagatgaagg 27387731  T
Q  230 aaaaaagagcgcattactaaaca--tacataaacaaaacgacattaacaaacaccataatcacaccctaacctatttttgtgtcgggttccttcctaaaa 327  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||  |||||||||||||||  ||| |||||||||||||| |    
T  27387732 aaaaaagagcgcattactaaacacatacataaacaaaatgacattaacaaacaccataatcgtaccctaacctattttcatgtggggttccttcctaata 27387831  T
Q  328 tgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctcagttgttcactactgactt 427  Q
    ||||||||| |||| ||||| ||||||||||||||||||||||||||||||  || ||||| ||| |||||||||||| ||  ||| |  | |           
T  27387832 tgtaggaaatgaagactttaaattagaaaagccttctgttgccaaattcctagcacgttcagcttctcttaagtcgacatcgtttgat-gcaa------- 27387923  T
Q  428 gtgttgtgtggaagaatattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttc 527  Q
         |||  |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||    
T  27387924 -----gtgcagaagcaaattctttacttttttgtgcccactcactgcattcagcgttcaactcttccttctgaacattacatctgttcactactgacttc 27388018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 185 - 398
Target Start/End: Complemental strand, 26631682 - 26631470
Alignment:
Q  185 taaagaccttacttgtaaaattcaatgggataaaaccaggc-atggaaaaaagagcgcattactaaacatacataaacaaaacgacattaacaaacacca 283  Q
    |||| |||||||||||||||  |||||||||||||||||   | ||||||||||||||| |||||| | |||||||||||||||||||||||||| ||      
T  26631682 taaaaaccttacttgtaaaacccaatgggataaaaccagatgaaggaaaaaagagcgcagtactaagcttacataaacaaaacgacattaacaaaaacac 26631583  T
Q  284 taatcacaccctaacctatttttgtgtcgggttccttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaa 383  Q
    ||||||||||||| ||||||||||||   || ||| ||||||||||||||||| || |  |||| ||| | ||||||||||||||| ||||||||| |||    
T  26631582 taatcacaccctatcctatttttgtg--aggctccctcctaaaatgtaggaaaggatgattttaaatttgcaaagccttctgttgcgaaattcctcgcaa 26631485  T
Q  384 gttcaacttttctta 398  Q
    ||||| ||| |||||    
T  26631484 gttcagcttctctta 26631470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 444 - 535
Target Start/End: Complemental strand, 26631437 - 26631346
Alignment:
Q  444 tattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 535  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||  |||||||| ||||||||||||||||  |||| ||||||||||||    
T  26631437 tattctttactttgttgtgcccactcagtacattcagccttcaacttatccttctgaacatcacatttgttcaggactgacttcaaatcatc 26631346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 445 - 531
Target Start/End: Complemental strand, 28085750 - 28085664
Alignment:
Q  445 attctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaat 531  Q
    ||||||||||||| |||||||| ||| |||||||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||||||    
T  28085750 attctttactttgctgtgcccattcagtgcattcagccttcaacttttccttctgaacatcacatttgttcagtactgacttcaaat 28085664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 408
Target Start/End: Complemental strand, 27380846 - 27380751
Alignment:
Q  313 ggttccttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctc 408  Q
    |||||||||||||||||||||||| |||| ||||| ||| | ||||||||||||||||| ||||||| || ||||| ||| ||||| |||||||||    
T  27380846 ggttccttcctaaaatgtaggaaatgaagactttaaatttgcaaagccttctgttgccagattcctcacacgttcagcttctcttacgtcgacctc 27380751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 131 - 287
Target Start/End: Original strand, 19482064 - 19482221
Alignment:
Q  131 gggactaggaaaatcaatgcacaagagaataatattgcaatacagttgcctcaataaagaccttacttgtaaaattcaatgggataaaaccaggc-atgg 229  Q
    |||||||||  ||||||| |||||| |||||||| ||    |||  ||||||| |||| ||||| | |||||||  ||||||||||||||||||  | ||    
T  19482064 gggactaggccaatcaatacacaagggaataataatgtcggacaactgcctcattaaaaaccttgcctgtaaaacccaatgggataaaaccaggtgaagg 19482163  T
Q  230 aaaaaagagcgcattactaaacatacataaacaaaacgacattaacaaacaccataat 287  Q
    ||||||||| ||| || |||||||||| |||||||| || ||||||||| ||||||||    
T  19482164 aaaaaagagtgcaatagtaaacatacagaaacaaaatgagattaacaaaaaccataat 19482221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 535
Target Start/End: Complemental strand, 27350838 - 27350750
Alignment:
Q  447 tctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 535  Q
    ||||| |||||  ||||||| ||| |||||||||| |||||||  | |||||| |||||||||||||||||||||| ||||||||||||    
T  27350838 tctttgctttgcagtgcccattcagtgcattcagccttcaacttctgcttctgaacatcacatttgttcactactgacttcaaatcatc 27350750  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 313 - 408
Target Start/End: Complemental strand, 19478257 - 19478162
Alignment:
Q  313 ggttccttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctc 408  Q
    |||||||||||||||||||||||| |||| ||| | ||  | ||||||||||||||||| ||||||| || ||||| ||| ||||| |||||||||    
T  19478257 ggttccttcctaaaatgtaggaaatgaagacttcaaatctgcaaagccttctgttgccagattcctcgcacgttcagcttctcttacgtcgacctc 19478162  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 19481978 - 19482028
Alignment:
Q  42 tgttggcacctcaatcctaccacctatcatctagagcactccaataataat 92  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  19481978 tgttggcaccgcaatcctaccacatatcatctagagcactccaataataat 19482028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 27382979 - 27383029
Alignment:
Q  42 tgttggcacctcaatcctaccacctatcatctagagcactccaataataat 92  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  27382979 tgttggcaccacaatcctaccacatatcatctagagcactccaataataat 27383029  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 413
Target Start/End: Complemental strand, 28085953 - 28085769
Alignment:
Q  231 aaaaagagcgcattactaaacatacataaacaaaacgacattaacaaacaccataatc---acaccctaacctatttttgtgtcgggttccttcctaaaa 327  Q
    ||||||||||||  ||||| ||||||||||||||  |||||||||||| || ||||||   |   |||| |||| ||||||||   ||| ||||||||||    
T  28085953 aaaaagagcgcagcactaagcatacataaacaaagtgacattaacaaaaacgataatcatgatgacctagcctaattttgtgt-ttgtttcttcctaaaa 28085855  T
Q  328 tgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctcagttg 413  Q
    ||||||||| ||||  |||| |||   |||||||||||||||||| ||| || || ||||| ||| | ||| ||||||||| ||||    
T  28085854 tgtaggaaaggaagattttaaatttacaaagccttctgttgccaacttcatcacacgttcagcttctattacgtcgacctccgttg 28085769  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 535
Target Start/End: Complemental strand, 28006667 - 28006577
Alignment:
Q  445 attctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 535  Q
    |||||||||||||||||||||||||   ||||||||| |||||||    |||||| ||||| ||| |||||||| ||| ||||||||||||    
T  28006667 attctttactttgttgtgcccactccgcgcattcagccttcaacttgctcttctgaacatcgcatgtgttcacttctgacttcaaatcatc 28006577  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 27350954 - 27350893
Alignment:
Q  318 cttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctc 379  Q
    ||||||||| ||||||||| ||||  |||| ||||| |||||||||||||||||||||||||    
T  27350954 cttcctaaattgtaggaaaggaagattttaaattagcaaagccttctgttgccaaattcctc 27350893  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 27981256 - 27981195
Alignment:
Q  318 cttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctc 379  Q
    ||||||||| ||||||||| ||||  |||| ||||| ||||||||||||| |||||||||||    
T  27981256 cttcctaaattgtaggaaatgaagattttaaattagcaaagccttctgtttccaaattcctc 27981195  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 26632387 - 26632323
Alignment:
Q  315 ttccttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctc 379  Q
    |||||||||||||||||||||| || |  |||| ||| | |||||||||| ||||||||||||||    
T  26632387 ttccttcctaaaatgtaggaaatgatgattttaaatttgtaaagccttcttttgccaaattcctc 26632323  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 532
Target Start/End: Complemental strand, 26632271 - 26632184
Alignment:
Q  445 attctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatc 532  Q
    ||||| |||||||||||||||||| |   |||||||| |||| || || |||||| |||||||||| ||||| | ||| |||||||||    
T  26632271 attctctactttgttgtgcccacttagaacattcagccttcagctttttcttctgaacatcacattagttcaatgctgacttcaaatc 26632184  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 408
Target Start/End: Complemental strand, 28006781 - 28006691
Alignment:
Q  318 cttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctc 408  Q
    |||| ||||||||||||||| ||| ||||| ||| | |||||||||| ||||||| || ||| || ||||  ||| ||||| |||||||||    
T  28006781 cttcttaaaatgtaggaaacaaagactttaaatttgcaaagccttcttttgccaactttctcacacgttctgcttctcttaggtcgacctc 28006691  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 19482255 - 19482323
Alignment:
Q  321 cctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaagttcaa 389  Q
    ||||||||||||||||| |||  |||| ||| | |||||||||| |||||||| ||||| || ||||||    
T  19482255 cctaaaatgtaggaaacaaagattttaaatttgtaaagccttcttttgccaaagtcctcgcacgttcaa 19482323  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 535
Target Start/End: Original strand, 6164269 - 6164357
Alignment:
Q  447 tctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 535  Q
    |||||||||||||||||||| ||| |||||| |||  |||||   |||||||| ||||||||||||||||||||||  |||||||||||    
T  6164269 tctttactttgttgtgcccattcagtgcatttagccatcaacctctccttctgaacatcacatttgttcactactgatttcaaatcatc 6164357  T

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Target: scaffold1805 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 313 - 408
Target Start/End: Complemental strand, 118 - 23
Alignment:
Q  313 ggttccttcctaaaatgtaggaaacgaaggctttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctc 408  Q
    |||| ||||||||||||||||| | |||| ||||| ||| | ||||||||||||||||| ||||||| || ||||| ||| ||||| |||||||||    
T  118 ggtttcttcctaaaatgtaggatatgaagactttaaatttgcaaagccttctgttgccagattcctcacacgttcagcttctcttacgtcgacctc 23  T

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Target: scaffold1805; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 259 - 183
Alignment:
Q  177 tgcctcaataaagaccttacttgtaaaattcaatgggataaaaccagg-catggaaaaaagagcgcattactaaaca 252  Q
    ||||||| |||| ||||||| ||||||||||||||| || ||||||||  | ||||||||||| |||  ||||||||    
T  259 tgcctcattaaaaaccttacctgtaaaattcaatggaatgaaaccaggtgaaggaaaaaagagtgcagcactaaaca 183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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