View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_29 (Length: 532)
Name: NF0830_low_29
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 55760181 - 55759942
Alignment:
| Q |
15 |
aacaaagggaaaacataaagattgacttctaataaactcatctcattcagatgtgcctttctttcctttgccttttgtttctttgttttgtaacccagct |
114 |
Q |
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| T |
55760181 |
aacaaagggaaaacagaaagattgacttctaataaactcatctcattcagatgtgcctttctttcctttgccttttgtttctctgttttgtaacccatct |
55760082 |
T |
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| Q |
115 |
gagtctgagttctctttgctccaatttcatttattgttttttccctcaatatttcttccttcttttcacttaaatcatatcacatatacatcttataact |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55760081 |
gagtctgagttctctttgctccaatttcatttattgttttttccctcaatatttcttccttcttttcacttaaatcatatcacatatacatcttataact |
55759982 |
T |
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| Q |
215 |
attaattttatgaaatttaatcttatgcttgatgaatcaa |
254 |
Q |
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| T |
55759981 |
attaattttatgaaatttaatcttatgcttgatgaatcaa |
55759942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 292 - 504
Target Start/End: Complemental strand, 55759827 - 55759617
Alignment:
| Q |
292 |
tcttcttcaacattcatcgtgaaacctttcaagcattgctttctctcatccaagaaacggtttaagtgttttcattttctggtaacattcattatcgcta |
391 |
Q |
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| T |
55759827 |
tcttcttcaacattcatcgtgaaacctt-caagcattgctttctctcatccaagaaacggtttcagtgttttcattttctggtaacattcattatcgcta |
55759729 |
T |
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| Q |
392 |
tttgcttttcgttttcatgactccttattgatgatgatgaatctttacggtaacattcatcatcattatttcgttttcatgaatgcttgttcatgatgct |
491 |
Q |
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| T |
55759728 |
tttgcttttcgttttcatgactccttattgatgatgatgaatctttacggtaacattcatcatcattatttcgtttt-atgaatgcttgttcatgatgct |
55759630 |
T |
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| Q |
492 |
gatgaatcttcct |
504 |
Q |
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| T |
55759629 |
gatgaatcttcct |
55759617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 453 - 504
Target Start/End: Complemental strand, 55759552 - 55759501
Alignment:
| Q |
453 |
atcattatttcgttttcatgaatgcttgttcatgatgctgatgaatcttcct |
504 |
Q |
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| T |
55759552 |
atcattatttcgttttcatgaatgcttgttcatgatgctgatgaatcttcct |
55759501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 38939537 - 38939723
Alignment:
| Q |
87 |
ttttgtttctttgttttgtaacccagctgagtctgagttctctttgctccaatttcatttattgttttttccctcaatatttcttccttcttttcactta |
186 |
Q |
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| T |
38939537 |
ttttgtttctctgttttgtaacccagctgagtttgagttctctttgcaccgatttcatttattgttttttccctcagtatctcttccttc-tttcactta |
38939635 |
T |
|
| Q |
187 |
aatcatatcacatatacatcttataactattaattttatgaaa-tttaatcttatgcttgatgaatcaaaatgaataatactacaaggccaa |
277 |
Q |
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||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
38939636 |
aatcaaatcac--atacatcttataa-tataaattttatgaaattttaatcttatgctt-actattcaaaatgaataatactacaaggccaa |
38939723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 365 - 469
Target Start/End: Original strand, 38939923 - 38940029
Alignment:
| Q |
365 |
attttctggtaacattcattatcgctatttgc-ttttcgttttca-tgactccttattgatgatgatgaatctttacggtaacattcatcatcattattt |
462 |
Q |
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|||||| |||||||||| |||||||||||| | ||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
38939923 |
attttcaggtaacattcgttatcgctattttccttttcgttttccgtgaatccttgttgatgatgatgaatctctacggtaacattcatcatcattactt |
38940022 |
T |
|
| Q |
463 |
cgttttc |
469 |
Q |
| |
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||||||| |
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| T |
38940023 |
cgttttc |
38940029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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