View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_32 (Length: 493)

Name: NF0830_low_32
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_32
NF0830_low_32
[»] chr4 (2 HSPs)
chr4 (22-424)||(28564394-28564804)
chr4 (309-415)||(13676869-13676975)
[»] chr5 (1 HSPs)
chr5 (36-422)||(1192271-1192658)
[»] chr8 (2 HSPs)
chr8 (184-419)||(15958278-15958518)
chr8 (359-415)||(12348067-12348123)
[»] chr6 (1 HSPs)
chr6 (309-415)||(19963743-19963849)
[»] chr3 (1 HSPs)
chr3 (309-415)||(44197586-44197692)
[»] chr1 (1 HSPs)
chr1 (359-415)||(25281778-25281834)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 22 - 424
Target Start/End: Original strand, 28564394 - 28564804
Alignment:
Q  22 catcatcactctcctcctcactctcgtcggagtcggaactatccttgtcaacattcatcttatcctgtcaatgatgcatattcccattgtattcaataac 121  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  28564394 catcctcactctcctcctcactctcgtcggagtcggaaccatccttgtcaacattcatcttatcctgtcattgacgcatattcccattgtattcaataac 28564493  T
Q  122 a--------taacatctgaataaaaa-cta-tcaattgacgcagtattttagtttatttaacatataccataaccatgtttagatttcatttcaatatag 211  Q
    |        ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  28564494 acaataacataacatctgaataaaaaactaatcaattgacgcagtattttagtttatttaacaaataccataaccatatttagatttcatttcaatatag 28564593  T
Q  212 ctacatgctactacattttttgtgtgaagacctacatgctactacatttgtagttataaaatacagaacaatacctcgtcatcagacgaatcactctccg 311  Q
     |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28564594 gtacatgctactacattttttttg--aagacctacatgctactacatttgtagttataaaataaagaacaatacctcgtcatcagacgaatcactctccg 28564691  T
Q  312 attcactaacctctttcttagcagccacaggcttcttgtcttcgtcagagctgctatcatcatcttcgtcgtcagaatctgagctatctttcttactctt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28564692 attcactaacctctttcttagcagccacaggcttcttgtcttcgtcagagctgctatcatcatcttcatcgtcagaatctgagctatctttcttactctt 28564791  T
Q  412 ttttgcaacagct 424  Q
    |||||||||||||    
T  28564792 ttttgcaacagct 28564804  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 309 - 415
Target Start/End: Original strand, 13676869 - 13676975
Alignment:
Q  309 ccgattcactaacctctttcttagcagccacaggcttcttgtcttcgtcagagctgctatcatcatcttcgtcgtcagaatctgagctatctttcttact 408  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||  ||||||||||||| |||| |||||| |||||||||||||||||    
T  13676869 ccgattcactaacctctttcttagcagccacaagtttcttctcttcttcagagcttgtatcatcatcttcatcgttagaatcggagctatctttcttact 13676968  T
Q  409 ctttttt 415  Q
    |||||||    
T  13676969 ctttttt 13676975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 36 - 422
Target Start/End: Original strand, 1192271 - 1192658
Alignment:
Q  36 tcctcactctcgtcggagtcggaactatccttgtcaacattcatcttatcctgtcaatgatgcatattcccattgtat-------tcaataacataacat 128  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||       |||||||||||||||    
T  1192271 tcctcactctcatcagagtcggaactatccttgtcagcattcatcttatcctgtcattgacgcatattcccattgtatcattaactcaataacataacat 1192370  T
Q  129 ctgaataaaaactatcaattgacgcagtattttagtttatttaacatataccataaccatgtttagatttcatttcaatatagctacatgctactacatt 228  Q
    ||||||||||| |||||||||| | | ||||| ||||||||||||| ||||||| |||||||||| |||||||| |||||||| ||||||||||||||||    
T  1192371 ctgaataaaaattatcaattgatgtactattt-agtttatttaacaaataccattaccatgtttatatttcattccaatataggtacatgctactacatt 1192469  T
Q  229 ttttgt-gtgaagacctacatgctactacatttgtagttataaaatacagaa----caatacctcgtcatcagacgaatcactctccgattcactaacct 323  Q
    |||| | |||| |||||||||          |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  1192470 tttttttgtgaggacctacat----------ttgtagttataaaatacagaaacttcaatacctcgtcatcagacgaatcactctccgattcactaacct 1192559  T
Q  324 ctttcttagcagccacaggcttcttgtcttcgtcagagctgctatcatcatcttcgtcgtcagaatctgagctatctttcttactcttttttgcaacag 422  Q
    ||||||||||||||||||| ||||| ||||| ||||||||  ||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  1192560 ctttcttagcagccacaggtttcttctcttcttcagagctagtatcatcatcttcatcgtcagaatctgagctatctttcatacttttttttgcaacag 1192658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 184 - 419
Target Start/End: Complemental strand, 15958518 - 15958278
Alignment:
Q  184 accatgtttagatttcatttcaatatagctacatgctactacattttttgt--gtgaagacctacatgctactacatttgtagttataaaatacagaa-- 279  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||||| |  |||| ||||||||||||||||||||||||||||||||||||||||      
T  15958518 accatgtttatatttcattccaatataggtacatgctactacattttttttttgtgaggacctacatgctactacatttgtagttataaaatacagaaac 15958419  T
Q  280 --caatacctcgtcatcagacgaatcactctccgattcactaacctctttcttagcagccacaggcttcttgtcttcgtcagagctgctatcatcatctt 377  Q
      |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||||||||||    
T  15958418 ttcaatacctcgtcgt-agacgaatcactctccgattcactaacctctttcttagcagccacatgtttcttctcttcttcagagctgttatcatcatctt 15958320  T
Q  378 cgtcgtcagaatctgagctatctttcttactcttttttgcaa 419  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  15958319 catcgtcagaatctgagctatctttcttactcttttttgcaa 15958278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 12348123 - 12348067
Alignment:
Q  359 gagctgctatcatcatcttcgtcgtcagaatctgagctatctttcttactctttttt 415  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  12348123 gagctgctatcatcatcttcatcgtcagaatcagagctatctttcttactcattttt 12348067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 309 - 415
Target Start/End: Complemental strand, 19963849 - 19963743
Alignment:
Q  309 ccgattcactaacctctttcttagcagccacaggcttcttgtcttcgtcagagctgctatcatcatcttcgtcgtcagaatctgagctatctttcttact 408  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  19963849 ccgattcactaacctctttcttagcagccacaagtttcttctcttcttcagagcttctatcatcatcttcatcgtcagaatcggagctatctttcttact 19963750  T
Q  409 ctttttt 415  Q
    |||||||    
T  19963749 ctttttt 19963743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 309 - 415
Target Start/End: Original strand, 44197586 - 44197692
Alignment:
Q  309 ccgattcactaacctctttcttagcagccacaggcttcttgtcttcgtcagagctgctatcatcatcttcgtcgtcagaatctgagctatctttcttact 408  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  44197586 ccgattcactaacctctttcttagcagccacaagtttcttctcttcttcagagcttctatcatcatcttcatcgtcagaatcggagctatctttcttact 44197685  T
Q  409 ctttttt 415  Q
    |||||||    
T  44197686 ctttttt 44197692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 25281834 - 25281778
Alignment:
Q  359 gagctgctatcatcatcttcgtcgtcagaatctgagctatctttcttactctttttt 415  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||    
T  25281834 gagctgctatcatcatcttcatcgtcggaatcagagctatctttcttactcattttt 25281778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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