View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_35 (Length: 479)
Name: NF0830_low_35
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_35 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 2821405 - 2821875
Alignment:
| Q |
1 |
aatcaagattgatgcaaatgctgctatcattacccagctgtaaatttatatgcctagtcgatttgaagttaatcaggaggacatgtatgtatgtgtctca |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821405 |
aatcaagattgatgctaatgctgctatcattacccagctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctca |
2821504 |
T |
|
| Q |
101 |
gccaaccggtttcatccacccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttatgatatctttaatatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2821505 |
gccaaccggtttcatccacccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttataatatctttaatatt |
2821604 |
T |
|
| Q |
201 |
gtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaatattatgatttgttc |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821605 |
gtattagagtatcggaagttatttcctgcaattagtttataaccttataagagcatctcttaggattagagtttatatatcttaatattatgatttgttc |
2821704 |
T |
|
| Q |
301 |
ttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821705 |
ttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggtt |
2821804 |
T |
|
| Q |
401 |
cttattattttctctcattattttctttaaaattccacaacttcaacaaaggtcttgtatagtttcatctc |
471 |
Q |
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| T |
2821805 |
cttattattttctctcattcttatctttaaaatcccacaacttcaacaaaggtcttgtatagtttcatctc |
2821875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 2834917 - 2834828
Alignment:
| Q |
36 |
agctgtaaatttatatgcctagtcgatttgaagttaatcaggaggacatgtatgtatgtgtctcagccaaccggtttcatccacccatcatttc |
129 |
Q |
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| T |
2834917 |
agctgtaaatttaaacgcctagttgatttaaagtaaatctggacga----tatgtatgcgtctcagccaaccggtttcatccatccatcatttc |
2834828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 48196786 - 48196871
Alignment:
| Q |
331 |
taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc |
416 |
Q |
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|||| ||||||| | |||||| |||| ||||||| |||| ||| ||||| ||| ||||| |||| ||||||||||||||||||||| |
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| T |
48196786 |
taaacagggattagggtttagtcttttgtatcaacctactatcgagtcaatataaataatattccaggttcttattattttctctc |
48196871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 448
Target Start/End: Original strand, 46574483 - 46574573
Alignment:
| Q |
358 |
gtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaaca |
448 |
Q |
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|||||||| ||| || |||||||||||||| |||||||||||||||||| ||||| ||| |||| | |||| | ||||||||||||| |
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| T |
46574483 |
gtatcaaagtactattcagtcagtatcaatactattcaaggttcttattatcatctcttattcttttatctaaattctcacaacttcaaca |
46574573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 23539739 - 23539823
Alignment:
| Q |
331 |
taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc |
416 |
Q |
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| T |
23539739 |
taaatagggattagggtttagccttttggatcaagctactatcaagtca-tatcaataatattcaaaggtcttattattttctctc |
23539823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 415
Target Start/End: Original strand, 40569674 - 40569804
Alignment:
| Q |
286 |
tattatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatca |
385 |
Q |
| |
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|||| |||||||||||||||||| | |||| | || |||| || |||||||||||| | || || ||| ||||||| |||| || || |||||||| |
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| T |
40569674 |
tattttgatttgttcttgatttaggattgagtccgtgtatcgctataaatagggattagaattgagttttttgtatcaagctactattcagccagtatca |
40569773 |
T |
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| Q |
386 |
ataacatt-caaggttcttattattttctct |
415 |
Q |
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|||||||| | |||||||||||||||||||| |
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| T |
40569774 |
ataacattccgaggttcttattattttctct |
40569804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 16398052 - 16397967
Alignment:
| Q |
331 |
taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc |
416 |
Q |
| |
|
|||||||||||| || ||||| |||||| ||||| |||| || | | |||||||| || |||||||||| ||||||||||||||| |
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| T |
16398052 |
taaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattcaaggtttttattattttctctc |
16397967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 7379937 - 7380048
Alignment:
| Q |
177 |
atatcttatgatatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttat |
276 |
Q |
| |
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||||||||| ||| |||||||||| ||||||| |||| |||||||||||| ||||||||| || ||| ||||||||| || |||||| | ||||| |
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| T |
7379937 |
atatcttataataactttaatattatattagaatatcttaagttatttcctagaattagtttacaatctt---agagtatctattgggattaaattttat |
7380033 |
T |
|
| Q |
277 |
atatcttaatattat |
291 |
Q |
| |
|
|| |||| |||||| |
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|
| T |
7380034 |
attacttattattat |
7380048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 10723853 - 10723775
Alignment:
| Q |
371 |
atcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaacaa |
449 |
Q |
| |
|
||||||| | ||||||||| |||||| ||||||||||||||||||| | ||| | ||||||| ||||| |||||||| |
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|
| T |
10723853 |
atcaagttattatcaataatattcaaagttcttattattttctctcgtccatttatctaaaattgcacaatttcaacaa |
10723775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 15999333 - 15999232
Alignment:
| Q |
187 |
atatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaat |
286 |
Q |
| |
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||||||| ||||| ||||| |||||| ||||||| || | |||||||||||||| |||| ||||||||||||||||| || ||||||| |||| | |
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| T |
15999333 |
atatcttcgatattatattaaagtatcttaagttatgtcatatgattagtttataatctta---gagtatctcttaggatttgattttatattacttatt |
15999237 |
T |
|
| Q |
287 |
attat |
291 |
Q |
| |
|
||||| |
|
|
| T |
15999236 |
attat |
15999232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 32103 - 32200
Alignment:
| Q |
289 |
tatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaa |
386 |
Q |
| |
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|||||||||||||||||| | | |||| | | | ||||||| |||||||||||| || || || ||| ||||||| |||| ||||||||| |||||| |
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|
| T |
32103 |
tatgatttgttcttgattcatgattgagtctatgtatccctataaatagggattagtattcagttttttgtatcaacctactatcaagtcattatcaa |
32200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 42286593 - 42286518
Alignment:
| Q |
250 |
agagtatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatcc |
327 |
Q |
| |
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||||||||||||||||| |||||||| || | ||| |||| ||||||| |||||||||||| |||| ||||| ||||| |
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| T |
42286593 |
agagtatctcttaggatcagagttta-at-tgttattattttgatttggtcttgatttaagattgagtttgtgtatcc |
42286518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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