View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_37 (Length: 479)

Name: NF0830_low_37
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_37
NF0830_low_37
[»] chr7 (13 HSPs)
chr7 (268-453)||(39670586-39670763)
chr7 (77-185)||(39670850-39670966)
chr7 (130-185)||(35264879-35264934)
chr7 (130-185)||(43665156-43665210)
chr7 (130-185)||(17818325-17818380)
chr7 (150-185)||(5968040-5968075)
chr7 (150-185)||(41002238-41002273)
chr7 (150-185)||(43188916-43188951)
chr7 (150-184)||(38235853-38235887)
chr7 (150-184)||(42220096-42220130)
chr7 (150-184)||(42620340-42620374)
chr7 (306-344)||(43778756-43778794)
chr7 (306-346)||(3658686-3658726)
[»] chr3 (20 HSPs)
chr3 (130-185)||(46017245-46017299)
chr3 (130-185)||(33982726-33982781)
chr3 (130-185)||(32721068-32721123)
chr3 (314-346)||(43007669-43007701)
chr3 (150-185)||(2420718-2420753)
chr3 (150-185)||(27055891-27055926)
chr3 (150-185)||(34306657-34306692)
chr3 (150-185)||(39499257-39499292)
chr3 (150-185)||(45555692-45555727)
chr3 (150-185)||(46312407-46312442)
chr3 (150-185)||(47434307-47434342)
chr3 (150-185)||(47714660-47714695)
chr3 (150-185)||(47789433-47789468)
chr3 (268-321)||(21777482-21777534)
chr3 (151-184)||(30131874-30131907)
chr3 (152-185)||(41961964-41961997)
chr3 (152-185)||(43007509-43007542)
chr3 (130-158)||(1132959-1132987)
chr3 (306-342)||(45555507-45555543)
chr3 (130-158)||(52620859-52620887)
[»] chr1 (25 HSPs)
chr1 (133-185)||(20712203-20712255)
chr1 (137-185)||(36325761-36325809)
chr1 (150-185)||(2175393-2175428)
chr1 (130-185)||(49102959-49103014)
chr1 (150-185)||(896482-896517)
chr1 (154-185)||(13061384-13061415)
chr1 (150-185)||(23871450-23871485)
chr1 (150-185)||(32299161-32299196)
chr1 (150-185)||(39889645-39889680)
chr1 (150-185)||(40707191-40707226)
chr1 (150-185)||(42162040-42162075)
chr1 (150-185)||(47206411-47206446)
chr1 (150-185)||(47905676-47905711)
chr1 (151-185)||(13255404-13255438)
chr1 (150-184)||(15463869-15463903)
chr1 (306-348)||(33991771-33991813)
chr1 (151-185)||(42488614-42488648)
chr1 (150-184)||(50247655-50247689)
chr1 (151-184)||(51246562-51246595)
chr1 (306-342)||(1688386-1688422)
chr1 (306-342)||(28773549-28773585)
chr1 (130-158)||(28848823-28848851)
chr1 (317-349)||(41817114-41817146)
chr1 (130-158)||(50476557-50476585)
chr1 (130-158)||(51246597-51246625)
[»] chr8 (8 HSPs)
chr8 (130-185)||(43007737-43007792)
chr8 (150-185)||(1942040-1942075)
chr8 (150-185)||(2474754-2474789)
chr8 (150-185)||(4734483-4734518)
chr8 (150-185)||(31297335-31297370)
chr8 (150-185)||(34272574-34272609)
chr8 (151-185)||(3404561-3404595)
chr8 (130-158)||(40985108-40985136)
[»] chr5 (13 HSPs)
chr5 (130-185)||(35705133-35705188)
chr5 (130-185)||(43496868-43496923)
chr5 (150-185)||(1658236-1658271)
chr5 (150-185)||(10295542-10295577)
chr5 (150-185)||(17092956-17092991)
chr5 (150-185)||(27480159-27480194)
chr5 (150-185)||(37508377-37508412)
chr5 (150-185)||(41638430-41638465)
chr5 (306-344)||(35701632-35701670)
chr5 (302-343)||(19389648-19389689)
chr5 (152-185)||(35868890-35868923)
chr5 (152-185)||(38302345-38302378)
chr5 (307-343)||(7398958-7398994)
[»] chr2 (17 HSPs)
chr2 (130-185)||(4003447-4003502)
chr2 (130-185)||(36030832-36030887)
chr2 (150-185)||(4042023-4042058)
chr2 (150-185)||(10165472-10165507)
chr2 (150-185)||(13765926-13765961)
chr2 (150-185)||(25960597-25960632)
chr2 (150-185)||(36567265-36567300)
chr2 (130-173)||(36870282-36870325)
chr2 (150-185)||(43334866-43334901)
chr2 (150-185)||(44137194-44137229)
chr2 (151-185)||(3119839-3119873)
chr2 (150-184)||(31899344-31899378)
chr2 (306-344)||(40357686-40357724)
chr2 (151-184)||(1725969-1726002)
chr2 (151-184)||(8555764-8555797)
chr2 (153-185)||(13767480-13767512)
chr2 (145-185)||(16625791-16625831)
[»] chr4 (17 HSPs)
chr4 (149-185)||(3126999-3127035)
chr4 (97-165)||(45022747-45022815)
chr4 (150-185)||(7182178-7182213)
chr4 (150-185)||(13270262-13270297)
chr4 (130-185)||(31340806-31340861)
chr4 (150-185)||(32060705-32060740)
chr4 (150-185)||(32948513-32948548)
chr4 (150-185)||(47669869-47669904)
chr4 (150-185)||(56504456-56504491)
chr4 (151-185)||(38366087-38366121)
chr4 (302-335)||(19154253-19154286)
chr4 (152-185)||(49404610-49404643)
chr4 (300-337)||(49936720-49936757)
chr4 (130-158)||(3127045-3127073)
chr4 (153-185)||(13270015-13270047)
chr4 (308-344)||(17873427-17873463)
chr4 (306-346)||(22845044-22845084)
[»] scaffold0028 (1 HSPs)
scaffold0028 (150-185)||(35442-35477)
[»] chr6 (5 HSPs)
chr6 (150-185)||(1029352-1029387)
chr6 (150-185)||(24734939-24734974)
chr6 (130-176)||(4464964-4465010)
chr6 (150-183)||(26481120-26481153)
chr6 (130-158)||(26713882-26713910)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 268 - 453
Target Start/End: Complemental strand, 39670763 - 39670586
Alignment:
Q  268 gatttctcccttttcccctatatttttcaccccaaaagccctcccatcccctccaaacttccaaacaaagtctaagtatcttcacatcttcacattgttt 367  Q
    ||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||        |||||||||    
T  39670763 gatttctcccttttcccatatatttttcaccctaaaagccctaccatcccctccaaactttcaaacaaagtctaagtatcttc--------acattgttt 39670672  T
Q  368 cataaaacattgtannnnnnnnnnnnaagaaaggattcttataacattttattcataatcaattgttcgatacatattgctattga 453  Q
     ||||||||| |||            |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  39670671 tataaaacatcgtattttttatttttaagaaaggattcttataacattttgttcataatcaattgttcgatacatgttgctattga 39670586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 39670966 - 39670850
Alignment:
Q  77 cagagagttcatttttcttcttcttcataatacaactcttcctaattcgaactaactcaa----------aaattgtattggaggagggtttgtatgaat 166  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||    
T  39670966 cagagagttcatttttttt--tcttcataatacaactcttcctaattcgaactaactcaaaaatatttaaaaattgtattggaggagggtttatatgaat 39670869  T
Q  167 ttttcaaattcaatctatg 185  Q
    |||||||||||||||||||    
T  39670868 ttttcaaattcaatctatg 39670850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 35264934 - 35264879
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  35264934 aactaaaaaattgtattggaggagggtttatatgaatttttcaaatttaatttatg 35264879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 43665210 - 43665156
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  43665210 aactcaaaaattatattgg-ggagggtttatatgaatttttcaaattcaatctatg 43665156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 17818325 - 17818380
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||| ||||||||||||||||||||||||  ||||||| |||||||| ||||||||    
T  17818325 aactaaaaaattgtattggaggagggtttagatgaattcttcaaatttaatctatg 17818380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 5968075 - 5968040
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5968075 ggagggtttatatgaatttttcaaattcaatctatg 5968040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 41002273 - 41002238
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  41002273 ggagggtttatatgaatttttcaaattcaatctatg 41002238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 43188916 - 43188951
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  43188916 ggagggtttatatgaatttttcaaattcaatctatg 43188951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 38235853 - 38235887
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctat 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  38235853 ggagggtttatatgaatttttcaaattcaatctat 38235887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 42220096 - 42220130
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctat 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  42220096 ggagggtttatatgaatttttcaaattcaatctat 42220130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 42620374 - 42620340
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctat 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  42620374 ggagggtttatatgaatttttcaaattcaatctat 42620340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 43778756 - 43778794
Alignment:
Q  306 ccctcccatcccctccaaacttccaaacaaagtctaagt 344  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  43778756 ccctcccctcccctccaaacttccaaacaaagcctaagt 43778794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 3658686 - 3658726
Alignment:
Q  306 ccctcccatcccctccaaacttccaaacaaagtctaagtat 346  Q
    ||||||| ||||||||||||| |||||||||| ||||||||    
T  3658686 ccctcccctcccctccaaactcccaaacaaagcctaagtat 3658726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 46017245 - 46017299
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  46017245 aactcaaaaattgtattggaggagg-tttatatgaatttttcaaattcaatctatg 46017299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 33982781 - 33982726
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||    
T  33982781 aacttaaaaattgtagtgggggagggtttatatgaatttttcaaattcaatctatg 33982726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 32721123 - 32721068
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||| ||| ||||    
T  32721123 aactcaaaaattgcattggagaagggtttatatgaatttttcaaatttaatatatg 32721068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 43007669 - 43007701
Alignment:
Q  314 tcccctccaaacttccaaacaaagtctaagtat 346  Q
    |||||||||||||||||||||||||||||||||    
T  43007669 tcccctccaaacttccaaacaaagtctaagtat 43007701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 2420718 - 2420753
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  2420718 ggagggtttatatgaatttttcaaattcaatctatg 2420753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 27055926 - 27055891
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27055926 ggagggtttatatgaatttttcaaattcaatctatg 27055891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 34306657 - 34306692
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  34306657 ggagggtttatatgaatttttcaaattcaatctatg 34306692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 39499257 - 39499292
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  39499257 ggagggtttatatgaatttttcaaattcaatctatg 39499292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 45555692 - 45555727
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  45555692 ggagggtttatatgaatttttcaaattcaatctatg 45555727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 46312442 - 46312407
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  46312442 ggagggtttatatgaatttttcaaattcaatctatg 46312407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 47434342 - 47434307
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  47434342 ggagggtttatatgaatttttcaaattcaatctatg 47434307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 47714695 - 47714660
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  47714695 ggagggtttatatgaatttttcaaattcaatctatg 47714660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 47789468 - 47789433
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  47789468 ggagggtttatatgaatttttcaaattcaatctatg 47789433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 21777534 - 21777482
Alignment:
Q  268 gatttctcccttttcccctatatttttcaccccaaaagccctcccatcccctcc 321  Q
    ||||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||    
T  21777534 gatttctccattttcccctagatttctcacccccaaagccctccc-tcccctcc 21777482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 30131907 - 30131874
Alignment:
Q  151 gagggtttgtatgaatttttcaaattcaatctat 184  Q
    |||||||| |||||||||||||||||||||||||    
T  30131907 gagggtttatatgaatttttcaaattcaatctat 30131874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 41961997 - 41961964
Alignment:
Q  152 agggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||| ||||||||||||||||||||||||||    
T  41961997 agggtttatatgaatttttcaaattcaatctatg 41961964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 43007542 - 43007509
Alignment:
Q  152 agggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||| ||||||||||||||||||||||||||    
T  43007542 agggtttatatgaatttttcaaattcaatctatg 43007509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 1132987 - 1132959
Alignment:
Q  130 aactcaaaaattgtattggaggagggttt 158  Q
    |||||||||||||||||||||||||||||    
T  1132987 aactcaaaaattgtattggaggagggttt 1132959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 45555543 - 45555507
Alignment:
Q  306 ccctcccatcccctccaaacttccaaacaaagtctaa 342  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  45555543 ccctcccatcccctccaaactcccaaacaaagcctaa 45555507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 52620887 - 52620859
Alignment:
Q  130 aactcaaaaattgtattggaggagggttt 158  Q
    |||||||||||||||||||||||||||||    
T  52620887 aactcaaaaattgtattggaggagggttt 52620859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 20712255 - 20712203
Alignment:
Q  133 tcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  20712255 tcaaaaattgtattggaggagggtttatataaattcttcaaattcaatctatg 20712203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 36325761 - 36325809
Alignment:
Q  137 aaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||    
T  36325761 aaattgtattggaggagggtttatatgaattcttcaaattcaatctatg 36325809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 2175393 - 2175428
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||||||||||||||||||||||||||||||    
T  2175393 ggagggtttgtatgaatttttcaaattcaatctatg 2175428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 49103014 - 49102959
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||| ||| ||||    
T  49103014 aactaaaaaattgtattggaggagggtttatatgaattcttcaaatttaatatatg 49102959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 896517 - 896482
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  896517 ggagggtttatatgaatttttcaaattcaatctatg 896482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 185
Target Start/End: Complemental strand, 13061415 - 13061384
Alignment:
Q  154 ggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||||||||||||||||||||||||||    
T  13061415 ggtttgtatgaatttttcaaattcaatctatg 13061384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 23871485 - 23871450
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  23871485 ggagggtttatatgaatttttcaaattcaatctatg 23871450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 32299161 - 32299196
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  32299161 ggagggtttatatgaatttttcaaattcaatctatg 32299196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 39889680 - 39889645
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  39889680 ggagggtttatatgaatttttcaaattcaatctatg 39889645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 40707226 - 40707191
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  40707226 ggagggtttatatgaatttttcaaattcaatctatg 40707191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 42162075 - 42162040
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  42162075 ggagggtttatatgaatttttcaaattcaatctatg 42162040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 47206446 - 47206411
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  47206446 ggagggtttatatgaatttttcaaattcaatctatg 47206411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 47905711 - 47905676
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  47905711 ggagggtttatatgaatttttcaaattcaatctatg 47905676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 13255404 - 13255438
Alignment:
Q  151 gagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||| ||||||||||||||||||||||||||    
T  13255404 gagggtttatatgaatttttcaaattcaatctatg 13255438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 15463869 - 15463903
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctat 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  15463869 ggagggtttatatgaatttttcaaattcaatctat 15463903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 33991771 - 33991813
Alignment:
Q  306 ccctcccatcccctccaaacttccaaacaaagtctaagtatct 348  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||    
T  33991771 ccctcccttcccctccaaactcccaaacaaagcctaagtatct 33991813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 42488648 - 42488614
Alignment:
Q  151 gagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||| ||||||||||||||||||||||||||    
T  42488648 gagggtttatatgaatttttcaaattcaatctatg 42488614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 50247655 - 50247689
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctat 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  50247655 ggagggtttatatgaatttttcaaattcaatctat 50247689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 51246595 - 51246562
Alignment:
Q  151 gagggtttgtatgaatttttcaaattcaatctat 184  Q
    |||||||| |||||||||||||||||||||||||    
T  51246595 gagggtttatatgaatttttcaaattcaatctat 51246562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 1688386 - 1688422
Alignment:
Q  306 ccctcccatcccctccaaacttccaaacaaagtctaa 342  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  1688386 ccctcccctcccctccaaacttccaaacaaagcctaa 1688422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 28773549 - 28773585
Alignment:
Q  306 ccctcccatcccctccaaacttccaaacaaagtctaa 342  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  28773549 ccctcccctcccctccaaactcccaaacaaagtctaa 28773585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 28848851 - 28848823
Alignment:
Q  130 aactcaaaaattgtattggaggagggttt 158  Q
    |||||||||||||||||||||||||||||    
T  28848851 aactcaaaaattgtattggaggagggttt 28848823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 41817146 - 41817114
Alignment:
Q  317 cctccaaacttccaaacaaagtctaagtatctt 349  Q
    |||||||||| ||||||||||||||||||||||    
T  41817146 cctccaaactcccaaacaaagtctaagtatctt 41817114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 50476557 - 50476585
Alignment:
Q  130 aactcaaaaattgtattggaggagggttt 158  Q
    |||||||||||||||||||||||||||||    
T  50476557 aactcaaaaattgtattggaggagggttt 50476585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 51246625 - 51246597
Alignment:
Q  130 aactcaaaaattgtattggaggagggttt 158  Q
    |||||||||||||||||||||||||||||    
T  51246625 aactcaaaaattgtattggaggagggttt 51246597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 43007737 - 43007792
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  43007737 aactaaaaaattgtattgaaggagggtttatatgaatttttcaaatttaatctatg 43007792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 1942075 - 1942040
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1942075 ggagggtttatatgaatttttcaaattcaatctatg 1942040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 2474789 - 2474754
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  2474789 ggagggtttatatgaatttttcaaattcaatctatg 2474754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 4734518 - 4734483
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  4734518 ggagggtttatatgaatttttcaaattcaatctatg 4734483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 31297370 - 31297335
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  31297370 ggagggtttatatgaatttttcaaattcaatctatg 31297335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 34272574 - 34272609
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  34272574 ggagggtttatatgaatttttcaaattcaatctatg 34272609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 3404595 - 3404561
Alignment:
Q  151 gagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||| ||||||||||||||||||||||||||    
T  3404595 gagggtttatatgaatttttcaaattcaatctatg 3404561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 40985136 - 40985108
Alignment:
Q  130 aactcaaaaattgtattggaggagggttt 158  Q
    |||||||||||||||||||||||||||||    
T  40985136 aactcaaaaattgtattggaggagggttt 40985108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 35705188 - 35705133
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||||||| |||| |||||| ||| |||||||| |||||||||||||||||    
T  35705188 aactcaaaaattgcattgcaggaggatttatatgaattcttcaaattcaatctatg 35705133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 43496923 - 43496868
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||| ||| ||||    
T  43496923 aacttaaaaattgtattggaggagggtttatatgaattcttcaaatttaatttatg 43496868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 1658236 - 1658271
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1658236 ggagggtttatatgaatttttcaaattcaatctatg 1658271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 10295542 - 10295577
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  10295542 ggagggtttatatgaatttttcaaattcaatctatg 10295577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 17092956 - 17092991
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17092956 ggagggtttatatgaatttttcaaattcaatctatg 17092991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 27480194 - 27480159
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27480194 ggagggtttatatgaatttttcaaattcaatctatg 27480159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 37508412 - 37508377
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  37508412 ggagggtttatatgaatttttcaaattcaatctatg 37508377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 41638430 - 41638465
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  41638430 ggagggtttatatgaatttttcaaattcaatctatg 41638465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 35701632 - 35701670
Alignment:
Q  306 ccctcccatcccctccaaacttccaaacaaagtctaagt 344  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  35701632 ccctcccgtcccctccaaactcccaaacaaagtctaagt 35701670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 19389689 - 19389648
Alignment:
Q  302 aaagccctcccatcccctccaaacttccaaacaaagtctaag 343  Q
    |||||| |||| ||||||||||||| ||||||||||||||||    
T  19389689 aaagccttcccctcccctccaaactcccaaacaaagtctaag 19389648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 35868890 - 35868923
Alignment:
Q  152 agggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||| ||||||||||||||||||||||||||    
T  35868890 agggtttatatgaatttttcaaattcaatctatg 35868923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 38302378 - 38302345
Alignment:
Q  152 agggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||| ||||||||||||||||||||||||||    
T  38302378 agggtttatatgaatttttcaaattcaatctatg 38302345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 7398958 - 7398994
Alignment:
Q  307 cctcccatcccctccaaacttccaaacaaagtctaag 343  Q
    |||||| |||||||||||||| |||||||||||||||    
T  7398958 cctcccttcccctccaaacttgcaaacaaagtctaag 7398994  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 4003447 - 4003502
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||||||||||||||||||||||| | |||||| |||||||| ||| ||||    
T  4003447 aactcaaaaattgtattggaggagggtttatgtgaattcttcaaatttaatttatg 4003502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 36030832 - 36030887
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||||||||| ||||||||| ||| |||||||| |||||||||| ||||||    
T  36030832 aactcaaaaattgtaatggaggaggatttatatgaattcttcaaattcagtctatg 36030887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 4042023 - 4042058
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  4042023 ggagggtttatatgaatttttcaaattcaatctatg 4042058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 10165472 - 10165507
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  10165472 ggagggtttatatgaatttttcaaattcaatctatg 10165507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 13765961 - 13765926
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13765961 ggagggtttatatgaatttttcaaattcaatctatg 13765926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 25960632 - 25960597
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  25960632 ggagggtttatatgaatttttcaaattcaatctatg 25960597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 36567300 - 36567265
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  36567300 ggagggtttatatgaatttttcaaattcaatctatg 36567265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 36870282 - 36870325
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaa 173  Q
    |||| |||||||||||||||||||||||| |||||||| |||||    
T  36870282 aactaaaaaattgtattggaggagggtttatatgaattcttcaa 36870325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 43334866 - 43334901
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  43334866 ggagggtttatatgaatttttcaaattcaatctatg 43334901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 44137194 - 44137229
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  44137194 ggagggtttatatgaatttttcaaattcaatctatg 44137229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 3119873 - 3119839
Alignment:
Q  151 gagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||| ||||||||||||||||||||||||||    
T  3119873 gagggtttatatgaatttttcaaattcaatctatg 3119839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 31899378 - 31899344
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctat 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  31899378 ggagggtttatatgaatttttcaaattcaatctat 31899344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 40357686 - 40357724
Alignment:
Q  306 ccctcccatcccctccaaacttccaaacaaagtctaagt 344  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  40357686 ccctcccttcccctccaaacttccaaacaaagcctaagt 40357724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 1725969 - 1726002
Alignment:
Q  151 gagggtttgtatgaatttttcaaattcaatctat 184  Q
    |||||||| |||||||||||||||||||||||||    
T  1725969 gagggtttatatgaatttttcaaattcaatctat 1726002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 8555797 - 8555764
Alignment:
Q  151 gagggtttgtatgaatttttcaaattcaatctat 184  Q
    |||||||| |||||||||||||||||||||||||    
T  8555797 gagggtttatatgaatttttcaaattcaatctat 8555764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 13767480 - 13767512
Alignment:
Q  153 gggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||| ||||||||||||||||||||||||||    
T  13767480 gggtttatatgaatttttcaaattcaatctatg 13767512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 16625831 - 16625791
Alignment:
Q  145 ttggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||||||||| |||||||| |||||||| ||||||||    
T  16625831 ttggaggagggtttatatgaattcttcaaatttaatctatg 16625791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 3127035 - 3126999
Alignment:
Q  149 aggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3127035 aggagggtttatatgaatttttcaaattcaatctatg 3126999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 45022815 - 45022747
Alignment:
Q  97 ttcttcataatacaactcttcctaattcgaactaactcaaaaattgtattggaggagggtttgtatgaa 165  Q
    ||||| |||||||||  | |||||||| ||  ||||||||||||||||||||||||||| || ||||||    
T  45022815 ttctttataatacaaagcctcctaatttgaggtaactcaaaaattgtattggaggagggattatatgaa 45022747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 7182213 - 7182178
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7182213 ggagggtttatatgaatttttcaaattcaatctatg 7182178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 13270297 - 13270262
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13270297 ggagggtttatatgaatttttcaaattcaatctatg 13270262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 31340806 - 31340861
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||||| |||||||||||||| || ||| |||| |||||||||||| ||||    
T  31340806 aactcaaaaatggtattggaggaggggttatataaattcttcaaattcaatttatg 31340861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 32060705 - 32060740
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  32060705 ggagggtttatatgaatttttcaaattcaatctatg 32060740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 32948548 - 32948513
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  32948548 ggagggtttatatgaatttttcaaattcaatctatg 32948513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 47669869 - 47669904
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  47669869 ggagggtttatatgaatttttcaaattcaatctatg 47669904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 56504491 - 56504456
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  56504491 ggagggtttatatgaatttttcaaattcaatctatg 56504456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 38366087 - 38366121
Alignment:
Q  151 gagggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||||| ||||||||||||||||||||||||||    
T  38366087 gagggtttatatgaatttttcaaattcaatctatg 38366121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 19154253 - 19154286
Alignment:
Q  302 aaagccctcccatcccctccaaacttccaaacaa 335  Q
    ||||||||||| ||||||||||||||||||||||    
T  19154253 aaagccctcccctcccctccaaacttccaaacaa 19154286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 49404643 - 49404610
Alignment:
Q  152 agggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||| ||||||||||||||||||||||||||    
T  49404643 agggtttatatgaatttttcaaattcaatctatg 49404610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 49936720 - 49936757
Alignment:
Q  300 caaaagccctcccatcccctccaaacttccaaacaaag 337  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  49936720 caaaagccctcccctcccctccaaactcccaaacaaag 49936757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 3127073 - 3127045
Alignment:
Q  130 aactcaaaaattgtattggaggagggttt 158  Q
    |||||||||||||||||||||||||||||    
T  3127073 aactcaaaaattgtattggaggagggttt 3127045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 13270015 - 13270047
Alignment:
Q  153 gggtttgtatgaatttttcaaattcaatctatg 185  Q
    |||||| ||||||||||||||||||||||||||    
T  13270015 gggtttatatgaatttttcaaattcaatctatg 13270047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 17873427 - 17873463
Alignment:
Q  308 ctcccatcccctccaaacttccaaacaaagtctaagt 344  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  17873427 ctcccttcccctccaaacttccaaacaaagcctaagt 17873463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 22845084 - 22845044
Alignment:
Q  306 ccctcccatcccctccaaacttccaaacaaagtctaagtat 346  Q
    ||||||| ||||||||||||| |||||||||| ||||||||    
T  22845084 ccctcccttcccctccaaactcccaaacaaagcctaagtat 22845044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 35477 - 35442
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35477 ggagggtttatatgaatttttcaaattcaatctatg 35442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 1029352 - 1029387
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1029352 ggagggtttatatgaatttttcaaattcaatctatg 1029387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 24734939 - 24734974
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatctatg 185  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24734939 ggagggtttatatgaatttttcaaattcaatctatg 24734974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 4464964 - 4465010
Alignment:
Q  130 aactcaaaaattgtattggaggagggtttgtatgaatttttcaaatt 176  Q
    |||| |||||||||||||||||||||||| |||||||| || |||||    
T  4464964 aactaaaaaattgtattggaggagggtttatatgaattctttaaatt 4465010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 26481153 - 26481120
Alignment:
Q  150 ggagggtttgtatgaatttttcaaattcaatcta 183  Q
    ||||||||| ||||||||||||||||||||||||    
T  26481153 ggagggtttatatgaatttttcaaattcaatcta 26481120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 26713882 - 26713910
Alignment:
Q  130 aactcaaaaattgtattggaggagggttt 158  Q
    |||||||||||||||||||||||||||||    
T  26713882 aactcaaaaattgtattggaggagggttt 26713910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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