View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_4 (Length: 777)
Name: NF0830_low_4
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 7 - 637
Target Start/End: Complemental strand, 38287595 - 38286971
Alignment:
| Q |
7 |
tagattattcttgcctgatgaccgaacctctttttcctgagaaaccagagggttaacacnnnnnnntattgcattcttaatttacgagtatattttctcc |
106 |
Q |
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| T |
38287595 |
tagattatccttgtctgatgaccgaacctcttttttctgagaaaccagagggttaacacaaaaaa-tattgcattcttaatttacgagtatattttctcc |
38287497 |
T |
|
| Q |
107 |
tgacatgaatgtgtgtgtatttgtgtgtctatatatgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaa |
206 |
Q |
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|| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287496 |
tg-catgaatgtgtgtttatttgtgtgtctatatacgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaa |
38287398 |
T |
|
| Q |
207 |
gtgatatcatacgcacagacnnnnnnnnn--ggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaattatagacatc |
304 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38287397 |
gtgatatcatacgcacagacaaaaaaaaaaaggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaatcatagacatc |
38287298 |
T |
|
| Q |
305 |
atgattataaacttgctggattgtcatcaatgaa-gcaataaaaataactaataatcttactgttgattgagctttgtgatcgatgcatgagctaattta |
403 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287297 |
atgattataaacttgctggattgtcatcaatgaaagcagtaa---taactaataatcttactgttgattgagctttgtgatcgatgcatgagctaattta |
38287201 |
T |
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| Q |
404 |
aagaaaatttgtctttgtacacaaatacaccttattgactctttaagagagaaagaaatnnnnnnnnttatgtgaatatgtgatcgatataattaatatg |
503 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
38287200 |
aagaaaatttgtctttgtacacaaatataccttattgactctttaagagagaaagaaataaaaaaaattatgtgaatatgtgatcgata----taatatg |
38287105 |
T |
|
| Q |
504 |
ttgatgataagatacaaagaaaatagagagaaaatgatatacatactatggaatgagtgttgagaaattagagatgaggtaatttaaagtaagcaaattg |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287104 |
ttgatgataagatacaaagaaaatagagagaaaatgatatacatactatggaatgagtgttgagaaattagagatgaggtaatttaaagtaagcaaattg |
38287005 |
T |
|
| Q |
604 |
aagtatatgcaaagttatatagttggtagttaat |
637 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38287004 |
aagtatatgcaaagttatatagttggtagttaat |
38286971 |
T |
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