View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_low_40 (Length: 449)
Name: NF0830_low_40
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 28022876 - 28023295
Alignment:
| Q |
1 |
gtgagggtgaaggagaccgataaggtgagtgacctgtgcgacaaagtttcacgatattggggcattccccttgatactttcacccttcatcgtctcaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28022876 |
gtgagggtgaaggagaccgataaggtgagtgacctgtgcaacaaagtttcacggtattggggcattccccttgatactttcacccttcatcgtctcaatg |
28022975 |
T |
|
| Q |
101 |
ttgaaatgatgcatgactgtcctcttcatgcatattatatcaacgaggcttctgaaattcaactttctgttgacattcaacctagatgattacatgcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28022976 |
ttgaaatgatgcatgactgtcctcttcatgcatattatatcaacgaggcttctgaaattcaactttctgttgacattcaacctagatgattacatgcctt |
28023075 |
T |
|
| Q |
201 |
ccatggtgatggtatggtttgaataagattttaatagaattttatatagcagatatagttagtatcaagctttgtaatgcacaagttagatttcgttatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28023076 |
ccatggtgatggtatggtttgaataagattttaatagaattctatatagcagatatagttagtatcaagctttgtaatgcacaagttagatttcgttatg |
28023175 |
T |
|
| Q |
301 |
aagtctgaaaacaattattcgcgaannnnnnncaaatgaatgaaatctatannnnnnnnatgaaactaaatcaaatgcagatatacatacaaatattaca |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28023176 |
aagtctgaaaacaattattcgcgaatttttttcaaatgaatgaaatctatattttttttatgaaactaaatcaaatgcagatatacatacaaatattaca |
28023275 |
T |
|
| Q |
401 |
atgaccacatttaacataag |
420 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28023276 |
atgaccacatttaacataag |
28023295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2384 times since January 2019
Visitors: 6162