View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_43 (Length: 432)

Name: NF0830_low_43
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_43
NF0830_low_43
[»] chr5 (1 HSPs)
chr5 (161-419)||(16801440-16801698)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 161 - 419
Target Start/End: Original strand, 16801440 - 16801698
Alignment:
Q  161 gtaacttgaaaagattatatccttgctattgttggtagagtgccgttaatcaagactgtagttcaaaatatgattcttcattatatttccatctactctt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801440 gtaacttgaaaagattatatccttgctattgttggtagagtgccgttaatcaagactgtagttcaaaatatgattcttcattatatttccatctactctt 16801539  T
Q  261 ggccagtaagcttacttaaagatatggaaatgtggttgagaaattcatctggattagtcatagaaatagggcttcgaattagagatttgtcaagtatcaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801540 ggccagtaagcttacttaaagatatggaaatgtggttgagaaattcatctggattagtcatagaaatagggcttcgaattagagatttgtcaagtatcaa 16801639  T
Q  361 tgaagtagcaaatattataaagctttgtttgggatatcattcaatcagatttgcaacag 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801640 tgaagtagcaaatattataaagctttgtttgggatatcattcaatcagatttgcaacag 16801698  T

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