View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_44 (Length: 432)
Name: NF0830_low_44
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Original strand, 13692978 - 13693368
Alignment:
| Q |
13 |
cagatggctatgacgacgaagggtatgaatcggcaaagagcttggacgtttacatacagaccttctggagagttggatcacaaactctatgtgagcttct |
112 |
Q |
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| T |
13692978 |
cagatggctacgatgacggagggtatgaatcggcaaagagctttgacgtttacatacagaccttctggagagttggatcacaaactctatgtgagcttct |
13693077 |
T |
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| Q |
113 |
tcataagctttccagctcaaaaaccccaccaaattgcgttatctttgatgcatttatgccttgggctcttgatgttgccaagaattttgggctacttggt |
212 |
Q |
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| T |
13693078 |
tcataagctttctagctcaaaaaccccaccaaattgcgttatctttgatgcatttatgccttgggctcttgatgttgccaagaattttgggctacttggt |
13693177 |
T |
|
| Q |
213 |
gttccatttttcactcaatcttgttctgttaatagcatatactttcatactcatcagaagttgattgaattgccactttcacaatctgagtatttgttac |
312 |
Q |
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| T |
13693178 |
gttccatttttcactcaatcttgttctgttaatagcatatactttcatactcatcagaagttgattgaattgccaatttcacaatctgagtatttgttac |
13693277 |
T |
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| Q |
313 |
ctggattgccaaaacttgctcaaggggatttgccttctttcttgtataaatatggatcctatccaattatatttgacgtagttgtggatca |
403 |
Q |
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| T |
13693278 |
ctggattgccaaaacttgctcaaggggatttgccttctttcttgtataaatatggatcctatccaattatatttgacgtagttgtgaatca |
13693368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 13673398 - 13673034
Alignment:
| Q |
13 |
cagatggctatgacgacgaagggtatgaatcggcaaagagcttggacgtttacatacagaccttctggagagttggatcacaaactctatgtgagcttct |
112 |
Q |
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| T |
13673398 |
cagatggctatgatgatggaggctatgaatcagcagagagcttagaaatttacatggataccttttggagggttggatcaaaagatctttctgaacttct |
13673299 |
T |
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| Q |
113 |
tcataagctttccagctcaaaaaccccaccaaattgcgttatctttgatgcatttatgccttgggctcttgatgttgccaagaattttgggctacttggt |
212 |
Q |
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| T |
13673298 |
tcataaactttctagctcaaaataccctccaaattgtgttatctttgatgcatttatgccttgggctcttgatgttgccaagagttttggactagttggt |
13673199 |
T |
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| Q |
213 |
gttccatttttcactcaatcttgttctgttaatagcatatactttcatactcatcagaagttgattgaattgccactttcacaatctgagtatttgttac |
312 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || ||||||||| ||||||||||||||||||||| |
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| T |
13673198 |
gttgcatttttcactcaatcttgttctgttaacagcatatactttcatactcatgagaagttgatagagttgccacttacacaatctgagtatttgttac |
13673099 |
T |
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| Q |
313 |
ctggattgccaaaacttgctcaaggggatttgccttctttcttgtataaatatggatcctatcca |
377 |
Q |
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| T |
13673098 |
ctggattgccaaaacttgctcaaggggatttgccttcttttttgtataaatatggatcttatcca |
13673034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 376
Target Start/End: Original strand, 13686573 - 13686877
Alignment:
| Q |
72 |
accttctggagagttggatcacaaactctatgtgagcttcttcataagctttccagctcaaaaaccccaccaaattgcgttatctttgatgcatttatgc |
171 |
Q |
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|||||||||| |||||||||||||||||| | |||||||||||||| ||||| |||||| ||| ||| |||||||| |||||||||||||||||| | | |
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| T |
13686573 |
accttctggaaagttggatcacaaactctctcagagcttcttcataaactttcaagctcagaaaaccctccaaattgtgttatctttgatgcatttctac |
13686672 |
T |
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| Q |
172 |
cttgggctcttgatgttgccaagaattttgggctacttggtgttccatttttcactcaatcttgttctgttaatagcatatactttcatactcatcagaa |
271 |
Q |
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| T |
13686673 |
cttgggttcttgatgttggaaagagttttggattagttggtgttgctttttttactcaatcttgttctgttaatagtgtatactatcatactcatgagaa |
13686772 |
T |
|
| Q |
272 |
gttgattgaattgccactttcacaatctgagtatttgttacctggattgccaaaacttgctcaaggggatttgccttctttcttgtataaatatggatcc |
371 |
Q |
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|||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13686773 |
gttgatagagttgccacttacacaatctgagtatttgttacctggattgccaaaacttgctccaggggatttgccttctttcttgtataaatatggatcc |
13686872 |
T |
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| Q |
372 |
tatcc |
376 |
Q |
| |
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||||| |
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| T |
13686873 |
tatcc |
13686877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 13725987 - 13725950
Alignment:
| Q |
339 |
gatttgccttctttcttgtataaatatggatcctatcc |
376 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||| |
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| T |
13725987 |
gatttgccttctttcttgtatcaatatggaacctatcc |
13725950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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