View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_45 (Length: 430)
Name: NF0830_low_45
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 4 - 402
Target Start/End: Complemental strand, 40854026 - 40853624
Alignment:
| Q |
4 |
ggaggagcacagatacaggtaattgttt-gcttcttcaatattcaccattttattatagatcacctttccttgctatttgaagtaaatttttgtacgtgt |
102 |
Q |
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| T |
40854026 |
ggaggatcacagatacaggtaattgttttgcttcttcaatattcaccattttattatagatcacctttccttgctatttgaagtaaatttttgtacgtgt |
40853927 |
T |
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| Q |
103 |
gtgtgaagggattgaaacttgtatgttttattaaacattgtgcactattttgcttatgcaatttcacaagcccatttcttctaatctctatgatgctatc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40853926 |
gtgtgaagggattgaaacttgtatgttttattaaacattgtgcactattttgcttatgcaatttcacaagcccatttcttctaatctctatgatgctacc |
40853827 |
T |
|
| Q |
203 |
ctatgaatcaaaatatgacattgtattctatgtgc---ttatatttaataatttgcattccagatggatacttaagtgtcatgcctgcttcactgttact |
299 |
Q |
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| T |
40853826 |
ctatgaatcaaaatatgacattgtattctatgtgcttattatatttattaatttgcattccagatggatacttaagtgtcatgcctgcttcactgttact |
40853727 |
T |
|
| Q |
300 |
gctgaaattgagaggattttatctgtccaaaatgtggaaatggtggcacctagaggagctgtcacttttagtccattttcattagtagaggatgttcaaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40853726 |
gctgaaattgagaggattttatctgtccaaaatgtggaaatggtggcaccttgaggaactgtcacttttagtccattttcattagtagaggatgttcaaa |
40853627 |
T |
|
| Q |
400 |
act |
402 |
Q |
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||| |
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| T |
40853626 |
act |
40853624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 32 - 356
Target Start/End: Complemental strand, 40858402 - 40858085
Alignment:
| Q |
32 |
gcttcttcaatattcaccattttattatagatcacctttccttgctatttgaagtaaatttttgtacgtgtgtgtgaagggattgaaacttgtatgtttt |
131 |
Q |
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|||||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||| |
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| T |
40858402 |
gcttctacaatattcaccatgttattatagatcacctgtccttgctatttggagtaaattttttaa----tgtgtgacgggattgaaacttgtatgtttt |
40858307 |
T |
|
| Q |
132 |
attaaacattgtgcactattttgcttatgcaatttcacaagcccatttcttctaatctctatgatgctatcctatgaatcaaaatatgacattgtattct |
231 |
Q |
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|||||||||||||| |||| |||| ||||||||||||| ||| ||||||| |||||||| ||| |||||||| ||| || |||||| ||||||| | |
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| T |
40858306 |
gttaaacattgtgcagtattatgctcatgcaatttcacatgcctatttcttataatctct--gatactatcctacgaagcacaatatgctgttgtatttt |
40858209 |
T |
|
| Q |
232 |
atgtgcttatattt-aataatttgcattccagatggatacttaagtgtcatgcctgcttcactgttactgctgaaattgagaggattttatctgtccaaa |
330 |
Q |
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| T |
40858208 |
acgtgcttatcttttaattatttgcattccagatggatactcaagtgtcatgcctgcttcactgttactgctgaaattgggaggattt--tctgtccaaa |
40858111 |
T |
|
| Q |
331 |
atgtggaaatggtggcacctagagga |
356 |
Q |
| |
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||| |||||||| ||||||| ||||| |
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| T |
40858110 |
atgcggaaatggcggcaccttgagga |
40858085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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