View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_46 (Length: 420)

Name: NF0830_low_46
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_46
NF0830_low_46
[»] chr3 (1 HSPs)
chr3 (168-410)||(53147997-53148237)
[»] chr2 (1 HSPs)
chr2 (168-276)||(11734137-11734245)
[»] chr4 (4 HSPs)
chr4 (168-275)||(5922978-5923085)
chr4 (168-275)||(5530717-5530824)
chr4 (173-275)||(38178777-38178879)
chr4 (168-275)||(5936387-5936494)
[»] chr8 (2 HSPs)
chr8 (168-275)||(40919556-40919663)
chr8 (182-276)||(45319412-45319506)
[»] chr7 (1 HSPs)
chr7 (170-264)||(34839859-34839953)
[»] chr1 (1 HSPs)
chr1 (179-264)||(45454432-45454517)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 168 - 410
Target Start/End: Complemental strand, 53148237 - 53147997
Alignment:
Q  168 ctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgctt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148237 ctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgctt 53148138  T
Q  268 gcaaggt--aaatttatgtttctcatcactcaattgagattaatgaatgtttcttgattctcacaatgtcatttgcttaattaacttcgttcaatttcga 365  Q
    |||||||  ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148137 gcaaggtaaaaatttatgtttctcatcactcaattgagatt----aatgtttcttgattctcacaatgtcatttgcttaattaacttcgttcaatttcga 53148042  T
Q  366 ttcatatctagatcctttgaatttcattgttcatgtttatctctg 410  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  53148041 ttcatatctagatccgttgaatttcattgttcatgtttatctctg 53147997  T

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Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 11734245 - 11734137
Alignment:
Q  168 ctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgctt 267  Q
    |||| ||||||||||| |||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  11734245 ctgggaataattgggctaaaggtcattataccgaaggcgctgagcttattgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgctt 11734146  T
Q  268 gcaaggtaa 276  Q
    |||||||||    
T  11734145 gcaaggtaa 11734137  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 5923085 - 5922978
Alignment:
Q  168 ctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgctt 267  Q
    |||||||||| ||||| ||||| |||||||| ||||| |||||| | ||||| |||||||||||||||||| | |||||||| |||||||||||||||||    
T  5923085 ctggtaataactgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgctt 5922986  T
Q  268 gcaaggta 275  Q
    ||| ||||    
T  5922985 gcagggta 5922978  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 275
Target Start/End: Original strand, 5530717 - 5530824
Alignment:
Q  168 ctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgctt 267  Q
    |||| ||||| ||||| ||||| |||||||| ||||| |||||| | ||||| |||||||||||||||||| | |||||||| |||||||||||||||||    
T  5530717 ctgggaataactgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgctt 5530816  T
Q  268 gcaaggta 275  Q
    ||| ||||    
T  5530817 gcagggta 5530824  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 275
Target Start/End: Complemental strand, 38178879 - 38178777
Alignment:
Q  173 aataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaag 272  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||| || ||| | ||||||||  | ||||| || |||||||| |||||||||||||    
T  38178879 aataattgggcgaaaggtcattacaccgaaggcgctgagttgattgattccgttttggatgttgtgaggaaagaggctgagaattgcgattgcttgcaag 38178780  T
Q  273 gta 275  Q
    |||    
T  38178779 gta 38178777  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 5936494 - 5936387
Alignment:
Q  168 ctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgctt 267  Q
    |||||||||| ||||| ||||| ||||| || ||||| |||||| | ||||| |||||||||||||||||| | |||||||| || ||  ||||||||||    
T  5936494 ctggtaataactgggctaaaggacattacactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgaaaacagtgattgctt 5936395  T
Q  268 gcaaggta 275  Q
    ||| ||||    
T  5936394 gcagggta 5936387  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 40919663 - 40919556
Alignment:
Q  168 ctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgctt 267  Q
    |||||||||||||||| ||||| ||||| || ||||| |||||  | ||||| |||||||||||||||||||| |||||||| |||||||| || |||||    
T  40919663 ctggtaataattgggctaaaggacattacactgaaggagctgaacttattgattctgttcttgatgttgttcgaaaagaagctgagaattgcgactgctt 40919564  T
Q  268 gcaaggta 275  Q
    ||||||||    
T  40919563 gcaaggta 40919556  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 45319412 - 45319506
Alignment:
Q  182 gccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggtaa 276  Q
    ||||| |||||||| || || ||||| ||| | ||||||| |||||||||||||||  | || || |  ||||||||||||||||||||||||||    
T  45319412 gccaagggtcattacactgagggtgccgagctcattgactttgttcttgatgttgtaaggaaggaggttgagaattgtgattgcttgcaaggtaa 45319506  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 34839859 - 34839953
Alignment:
Q  170 ggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattg 264  Q
    ||||| |||||||| ||||||||||| || ||||| |||||  | ||||| || ||||| |||||||||||||||||||| |||||||| |||||    
T  34839859 ggtaacaattgggcgaaaggtcattacactgaaggcgctgaacttattgattcagttctcgatgttgttcgtaaagaagctgagaattgcgattg 34839953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 45454517 - 45454432
Alignment:
Q  179 tgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattg 264  Q
    ||||| |||||||| ||||| ||||| |||||||||||||| || || |||||||||||  | || || || ||||||||||||||    
T  45454517 tgggcgaaaggtcactatacagaaggagctgagttgattgattcggtgcttgatgttgtcaggaaggaggctgagaattgtgattg 45454432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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