View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_47 (Length: 415)
Name: NF0830_low_47
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 6696863 - 6697155
Alignment:
| Q |
30 |
tctccaccctagccatcccctgaatatcatttctatataagctttctgttgagtacatgctatattttccccttattttaatcataaatcttgaccaact |
129 |
Q |
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| T |
6696863 |
tctccaccctagccatcccctgaatatcatttctatataagctttctgttgagtacatgctatattttccccttattttaatcataaatctttaccaact |
6696962 |
T |
|
| Q |
130 |
aacaatatcattttagtcgtgaaagcaatgttctaacttatagtttataatttaaaaccattaaaacatgttccaaaaatataatataaagtactacata |
229 |
Q |
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| T |
6696963 |
aacaatatcattttagtcgtgaaagcaatgttctaacttatagtttataatttaaaaccattaaaacatgttccaaaaatataatataaagtactacata |
6697062 |
T |
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| Q |
230 |
ttaactggtttggtgtgtatgggatccaatgttggtttcccccaccaacttagtaagttatcttcgtaccacattcaagcaaagggaaaacaa |
322 |
Q |
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| T |
6697063 |
ttaactggtttggtgtgtatgggatccgatgttggtttcccccaccaacttagtaagttatcttcgtaccacatccaagcaaagggaaaacaa |
6697155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 51216611 - 51216702
Alignment:
| Q |
316 |
aaaacaagatgttgagctcaagggtttaatgagtctcagttaagatcaaatcaattcgacacacctgagttcaatccttggctagaataatc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51216611 |
aaaacaagatgttgagctcaagggtttaatgagtctcagttaagatcaaatcaatccgacacacctgagttcaatccttggctagaataatc |
51216702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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