View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_48 (Length: 415)

Name: NF0830_low_48
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_48
NF0830_low_48
[»] chr7 (1 HSPs)
chr7 (126-338)||(23205739-23205951)
[»] chr3 (3 HSPs)
chr3 (129-325)||(14031490-14031686)
chr3 (126-321)||(23426566-23426761)
chr3 (126-326)||(11587245-11587445)
[»] chr6 (2 HSPs)
chr6 (126-325)||(24891725-24891924)
chr6 (126-326)||(24988559-24988759)
[»] chr4 (2 HSPs)
chr4 (167-319)||(14193383-14193535)
chr4 (257-325)||(37972978-37973046)
[»] chr8 (2 HSPs)
chr8 (167-319)||(40730840-40730992)
chr8 (168-232)||(43234440-43234504)
[»] chr1 (1 HSPs)
chr1 (162-326)||(46055685-46055849)
[»] chr2 (1 HSPs)
chr2 (169-232)||(576525-576588)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 126 - 338
Target Start/End: Complemental strand, 23205951 - 23205739
Alignment:
Q  126 agatatcaaggatatcatagcttcccatcattttgaaatctttcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcg 225  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23205951 agatatcaaggatatcatagcttcccaccactttgaaatctttcatactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcg 23205852  T
Q  226 tctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagcttaatttt 325  Q
    || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23205851 tcaaatgcaaccctcacggagcaccaaactcctcctcttgatctcatagacaagcttagaattgatgctatggtaacctgcttcctaagagcttaatttt 23205752  T
Q  326 catttagcctttg 338  Q
    | |||||||||||    
T  23205751 cttttagcctttg 23205739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 129 - 325
Target Start/End: Complemental strand, 14031686 - 14031490
Alignment:
Q  129 tatcaaggatatcatagcttcccatcattttgaaatctttcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcgtct 228  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||     
T  14031686 tatcaaggatatcatagcttcacaccactttgaaatctttcacactcttagagaaggaaatcactgcgcagattttttagccaagcttggagccttgtca 14031587  T
Q  229 aatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagcttaatttt 325  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  14031586 aatgcagccctcacggagcaccaaacccctcctcttgatctcattgacaagcttagaattgatgctatgggaacctatttcctaagagcttaatttt 14031490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 126 - 321
Target Start/End: Original strand, 23426566 - 23426761
Alignment:
Q  126 agatatcaaggatatcatagcttcccatcattttgaaatctttcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcg 225  Q
    |||||||||||||||||||||||| || || ||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  23426566 agatatcaaggatatcatagcttcacaccactttaaaatctctcacactcttagagaaggaaaccaatgcgcagattttttagccaagcttggagcctcg 23426665  T
Q  226 tctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagcttaa 321  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||||||||    
T  23426666 tcaaatgcagccctcacggagcaccaaacccctcctcttgatctcattgacaagcttagaattgacgctatgggaacctatttcctaagagcttaa 23426761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 126 - 326
Target Start/End: Complemental strand, 11587445 - 11587245
Alignment:
Q  126 agatatcaaggatatcatagcttcccatcattttgaaatctttcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcg 225  Q
    ||||||||||||||| |||||||||||| | ||    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  11587445 agatatcaaggatataatagcttcccataacttccgtatctttcacactcttagagaaggaaaccattgcgcagattttttagccaagcttggagcctcg 11587346  T
Q  226 tctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagcttaatttt 325  Q
    || |||||||| |||  ||||||| |  |||||||||||||||| ||   |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11587345 tcaaatgcagctctcttggagcacgaggcccctcctcttgatctgatccgcaagcttaaaattgatgctatgggaacctgcttcctaagagcttaatttt 11587246  T
Q  326 c 326  Q
    |    
T  11587245 c 11587245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 126 - 325
Target Start/End: Complemental strand, 24891924 - 24891725
Alignment:
Q  126 agatatcaaggatatcatagcttcccatcattttgaaatctttcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcg 225  Q
    |||||||||||||||||| |||||  | || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  24891924 agatatcaaggatatcattgcttcaaaccactttgaaatctttcacactcttagagaaggaaaccactgcgcagattttttagccaagcttggagcctcg 24891825  T
Q  226 tctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagcttaatttt 325  Q
    || ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  24891824 tcaaatgcagccattacggagcaccaaacccctcctcttgatctcatggacaagcttagaatggatgctatgggaacctatttcctaagagcttaatttt 24891725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 126 - 326
Target Start/End: Complemental strand, 24988759 - 24988559
Alignment:
Q  126 agatatcaaggatatcatagcttcccatcattttgaaatctttcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcg 225  Q
    ||||||||| ||||| |||||||||||  | ||    |||||||||||||||||||||||||| |   ||||||| || ||||||||| |||||||| |     
T  24988759 agatatcaatgatataatagcttcccacaacttcaggatctttcacactcttagagaaggaaaccgcggcgcagacttcttagccaagatcggagccaca 24988660  T
Q  226 tctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagcttaatttt 325  Q
    || | |||| || ||  ||| |||||  ||||||||||||||||||| | || ||||| ||||||||||  ||||||||| || || ||| |||||||||    
T  24988659 tcaactgcacccttcttggaacaccagtcccctcctcttgatctcatcggcatgcttaaaattgatgcttcgggaacctgttttctgagaacttaatttt 24988560  T
Q  326 c 326  Q
    |    
T  24988559 c 24988559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 167 - 319
Target Start/End: Original strand, 14193383 - 14193535
Alignment:
Q  167 ttcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcgtctaatgcagccctcacggagcaccaaacccctcctcttga 266  Q
    |||||||||| |||||||||||||| |||||  ||||  | |||||||| ||||| ||||| |||| |||  ||  ||||||  |  ||||||||| |||    
T  14193383 ttcacactctaagagaaggaaatcactgcgccaatttcatggccaagcttggagcttcgtcaaatgtagctttcttggagcatgagtcccctcctcatga 14193482  T
Q  267 tctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagctt 319  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||||||||||    
T  14193483 tctcattgacaagcttaaaattgatgctatgggaacttgcttcctaagagctt 14193535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 37973046 - 37972978
Alignment:
Q  257 ctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagcttaatttt 325  Q
    |||||| ||||||||| |||||| ||  ||||||||||||| |||| |||||||||||||||| |||||    
T  37973046 ctcctcatgatctcatcgacaagattcaaattgatgctatgagaacttgcttcctaagagcttgatttt 37972978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 319
Target Start/End: Original strand, 40730840 - 40730992
Alignment:
Q  167 ttcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcgtctaatgcagccctcacggagcaccaaacccctcctcttga 266  Q
    ||||||||||||||||||||||||| ||||| ||||| || |||||||| ||| | ||||||||||  |   ||  ||| ||   | ||||||||| |||    
T  40730840 ttcacactcttagagaaggaaatcaatgcgccgatttcttcgccaagctaggaacttcgtctaatgttggtttcttggaacatttatcccctcctcatga 40730939  T
Q  267 tctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagctt 319  Q
    ||||||||||  |||||| | ||||||||||||||| || |||| ||||||||    
T  40730940 tctcatagacttgcttaggaatgatgctatgggaacttgtttcccaagagctt 40730992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 43234440 - 43234504
Alignment:
Q  168 tcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcgtctaatg 232  Q
    ||||||||||||||||||||| ||  |||| ||||| || | |||||| ||||| ||||||||||    
T  43234440 tcacactcttagagaaggaaaacaaagcgccgatttcttggtcaagctaggagcttcgtctaatg 43234504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 326
Target Start/End: Complemental strand, 46055849 - 46055685
Alignment:
Q  162 aatctttcacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcgtctaatgcagccctcacggagcaccaaacccctcct 261  Q
    ||||||||||||||||||||||||||| || |||||||| || | |||||| ||||||||| | || | |||| || ||  ||| |||||   |||||||    
T  46055849 aatctttcacactcttagagaaggaaaccactgcgcagacttctcagccaaactcggagccacttcaactgcacccttcttggaacaccagtaccctcct 46055750  T
Q  262 cttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagcttaattttc 326  Q
    |||||||||||   || ||| | ||||||||||   |||||||| ||||| ||| ||||| ||||    
T  46055749 cttgatctcatcagcatgctaaaaattgatgcttcaggaacctgtttcctgagaacttaagtttc 46055685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 576525 - 576588
Alignment:
Q  169 cacactcttagagaaggaaatcattgcgcagattttttagccaagctcggagcctcgtctaatg 232  Q
    |||||||| |||||||||||||| ||||| ||||| || ||||||||  |||| ||||||||||    
T  576525 cacactctaagagaaggaaatcaatgcgccgatttcttcgccaagctatgagcttcgtctaatg 576588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1124 times since January 2019
Visitors: 6137