View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_5 (Length: 774)

Name: NF0830_low_5
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_5
NF0830_low_5
[»] chr1 (2 HSPs)
chr1 (180-774)||(41689635-41690229)
chr1 (351-772)||(19539718-19540139)
[»] chr6 (1 HSPs)
chr6 (640-702)||(22318402-22318462)


Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 180 - 774
Target Start/End: Original strand, 41689635 - 41690229
Alignment:
Q  180 cagagatagacccatttgatgaacgcagaagaatgctaataactgacgaaaaaatctgttacagttgtacaaaatcagtcttgaatcagataattctcgc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689635 cagagatagacccatttgatgaacgcagaagaatgctaataactgacgaaaaaatctgttacagttgtacaaaatcagtcttgaatcagataattctcgc 41689734  T
Q  280 taagggcaagtcgacatcaaacaaagaaactataaaagtgtatcaaccaattcaacaaaaattgtgaattttcatacctacttgcagctggagcaaaccc 379  Q
    ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689735 tactggcaagtcgacataaaacaaagaaactataaaagtgtatcaaccaattcaacaaaaattgtgaattttcatacctacttgcagctggagcaaaccc 41689834  T
Q  380 tatggtataataagtaaggacaacccataatcctgactccagaaaagagagagggattctaaggatccatatgggaagtgcaaaagcccaagcaggataa 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689835 tatggtataataagtaaggacaacccataatcctgactccagaaaagagagagggattctaaggatccatatgggaagtgcaaaagcccaagcaggataa 41689934  T
Q  480 aataacaaatctctctgcttgaagaaaacaggaagtctaaaaatagtcattgcaagctcagccattccattgaacattatattaatcaaactgaagaata 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689935 aataacaaatctctctgcttgaagaaaacaggaagtctaaaaatagtcattgcaagctcagccattccattgaacattatattaatcaaactgaagaata 41690034  T
Q  580 atgcaccataaaattttctcccatcttcaagatgaccatatttcatttctgttctaaaaaacactgtcatagcaatcaaagacatgatcatgatctgagt 679  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41690035 atgcaccataaaattttctcccatcttcaagatgaccatatttcatttctgttctaaaaaacactgtcatagcaatcaaagacatgatcatgatctgagt 41690134  T
Q  680 agtcttaaatatgtatataaaagcgctacgctttgttagtagccactctcttgcaaaacatgccttgaagagttctagttttgagattccaaatt 774  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41690135 agtcttaaatatatatataaaagcgctacgctttgtcagtagccactctcttgcaaaacatgccttgaagagttctagttttgagattccaaatt 41690229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 351 - 772
Target Start/End: Complemental strand, 19540139 - 19539718
Alignment:
Q  351 tcatacctacttgcagctggagcaaaccctatggtataataagtaaggacaacccataatcctgactccagaaaagagagagggattctaaggatccata 450  Q
    ||||||||||| |  ||||||||||| || || ||||||||||| ||||  | ||||||| |||| ||||  | ||||||||| | ||| |||| ||| |    
T  19540139 tcatacctactaggtgctggagcaaaaccaatagtataataagtgaggatgatccataatactgattccactatagagagaggaactctgaggacccaaa 19540040  T
Q  451 tgggaagtgcaaaagcccaagcaggataaaataacaaatctctctgcttgaagaaaacaggaagtctaaaaatagtcattgcaagctcagccattccatt 550  Q
    |||| | |||||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||   || |||||||||||| || ||   ||||||    
T  19540039 tgggcaatgcaaaagcccatgctggataaaataggaaatctctctgcttgaagaaaacaggaagtctgttaacagtcattgcaagttctgctgctccatt 19539940  T
Q  551 gaacattatattaatcaaactgaagaataatgcaccataaaattttctcccatcttcaagatgaccatatttcatttctgttctaaaaaacactgtcata 650  Q
    |||||| | ||| || | |||||| || | |||||| ||| ||||||  ||||| ||||| | ||| |  | ||||  |||||||||||||||||||||     
T  19539939 gaacatcacattgataagactgaaaaacagtgcaccgtaatattttcctccatcctcaagtttaccgtgctccattcttgttctaaaaaacactgtcatg 19539840  T
Q  651 gcaatcaaagacatgatcatgatctgagtagtcttaaatatgtatataaaagcgctacgctttgttagtagccactctcttgcaaaacatgccttgaaga 750  Q
    | ||| |||||||||||  | ||||||  |||||||||||| |||| ||||  ||| |||||  | | |||||| ||||||| ||| |||||||||||||    
T  19539839 gtaattaaagacatgattgtaatctgaaaagtcttaaatatatatacaaaatagctgcgcttcatgaatagccattctcttgaaaagcatgccttgaaga 19539740  T
Q  751 gttctagttttgagattccaaa 772  Q
    ||||   ||| |||||||||||    
T  19539739 gttcccatttggagattccaaa 19539718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 702
Target Start/End: Complemental strand, 22318462 - 22318402
Alignment:
Q  640 acactgtcatagcaatcaaagacatgatcatgatctgagtagtcttaaatatgtatataaaag 702  Q
    |||||||||||||||| ||| |||  ||||| |||||||||||||||||||||||||||||||    
T  22318462 acactgtcatagcaataaaaaaca--atcattatctgagtagtcttaaatatgtatataaaag 22318402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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