View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_50 (Length: 407)
Name: NF0830_low_50
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_50 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 30 - 396
Target Start/End: Original strand, 1208 - 1594
Alignment:
| Q |
30 |
catcacacacatcttatttttgaaactattttttacctgcgtaaatatatatctcaacattatcagtcattttatcacacatttattgttgttt-aaatt |
128 |
Q |
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| T |
1208 |
catcacacacatcttattttttaaactattttttacctgcgtaaatatatatctcaacattaacagtcattttatcacacatttattgttgttttaaatt |
1307 |
T |
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| Q |
129 |
ttgtaaaatttgacatcaatacctattaatattaattatacttcaacttttgattcattcaaaatcattttttcttaatgagtaacttcgtgtcatatta |
228 |
Q |
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| T |
1308 |
ttgtaaaatttgacatcaatacctattaatattaattatacttcaacttttgattcattcaaaatcattttttcttaatgagtaacttcgtgtcatatta |
1407 |
T |
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| Q |
229 |
gcatgtgtgtgcgcgcattcgcatgtaaagataaaagacctttgtggtccgtaaacgtttggtgcacttcacaa-----------------actgattaa |
311 |
Q |
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| T |
1408 |
gcatgtgtgtgcgcgcatgcgcatgtaaagataaaagacctttgtggtccgtaaacgttcggtgcacttcacaaagtacggaattttagccactgattaa |
1507 |
T |
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| Q |
312 |
aaagattaagtagcttttcataatattatcatataaaatattttagt--tataattcaacaattaccttttaaattgccccattcat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1508 |
aaagattaagtagcttttcataatattatcatataaaatattttagttatataattcaacaattaccttttaaattgccccattcat |
1594 |
T |
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