View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_low_51 (Length: 406)
Name: NF0830_low_51
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_51 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 37 - 393
Target Start/End: Original strand, 7154179 - 7154535
Alignment:
| Q |
37 |
aaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatttaaatgaactaacttactt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7154179 |
aaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactt |
7154278 |
T |
|
| Q |
137 |
taagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatgaaata |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7154279 |
taagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatgaaata |
7154378 |
T |
|
| Q |
237 |
ccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattccagagaggtttgatggta |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7154379 |
ccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattccagagaggtttgatggta |
7154478 |
T |
|
| Q |
337 |
gtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaa |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7154479 |
gtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaa |
7154535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 37 - 391
Target Start/End: Original strand, 7141409 - 7141763
Alignment:
| Q |
37 |
aaaatccaagtgtgagagaaaaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatttaaatgaactaacttactt |
136 |
Q |
| |
|
|||||||||| ||||| || || |||||||||||| ||||| |||||||||| || ||| || |||||| |||| ||||| || | |||||| |||||| |
|
|
| T |
7141409 |
aaaatccaagagtgagggagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttactt |
7141508 |
T |
|
| Q |
137 |
taagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatgaaata |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| || ||| |||| ||| | |||| |||||||| ||||| ||| |
|
|
| T |
7141509 |
aaagttagtgatcaaagaaacattgaggttacacccaccttctcctttgttggttccaagattgagcacagaactaaccaaaatagatgggtatgatata |
7141608 |
T |
|
| Q |
237 |
ccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattccagagaggtttgatggta |
336 |
Q |
| |
|
||||||||||||| ||| | |||||||| |||||| | | ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
7141609 |
ccaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgata |
7141708 |
T |
|
| Q |
337 |
gtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaag |
391 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||||||| || |||||||| |
|
|
| T |
7141709 |
gtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaag |
7141763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 60 - 382
Target Start/End: Original strand, 7131708 - 7132030
Alignment:
| Q |
60 |
gcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatttaaatgaactaacttactttaagttagtgatcaaagaaacaa |
159 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| |||| ||||||||| |||| | | ||||| | ||| | || |||||||| ||||| || |
|
|
| T |
7131708 |
gcacaagctgaaataagagaagcatgcaaaggaaaagaaattatatctgaaaatgatattcaagaacttccatacctaaaattagtgataaaagagacct |
7131807 |
T |
|
| Q |
160 |
tgaggttacacccaccttcacctttattggtccctagagaatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgatgat |
259 |
Q |
| |
|
| ||||||||| ||||| | |||||||| |||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
7131808 |
taaggttacactcacctactcctttattactccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcatgat |
7131907 |
T |
|
| Q |
260 |
aaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattccagagaggtttgatggtagtttgattgatttcaaaggaaat |
359 |
Q |
| |
|
|||| |||||| ||||||| ||||| |||||||||||||||||||||||||| | ||||||||| ||||| ||||||| |||||||| | ||| ||| |
|
|
| T |
7131908 |
taatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttaatccagagagatttgaaggtagttctattgattttagagggaat |
7132007 |
T |
|
| Q |
360 |
aattttgagtatattccttttgg |
382 |
Q |
| |
|
|||||||| ||| |||||||||| |
|
|
| T |
7132008 |
aattttgaatatcttccttttgg |
7132030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 12268133 - 12268252
Alignment:
| Q |
57 |
aaagcacaagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatttaaatgaactaacttactttaagttagtgatcaaagaaa |
156 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||| ||||| | ||| | |||| |||||| ||||||| | |||||| |||| |||||||||||||| |
|
|
| T |
12268133 |
aaagcacaagctgaaataagagaagtttgtaaaggtaagaagagaatttatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaaa |
12268232 |
T |
|
| Q |
157 |
caatgaggttacacccacct |
176 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
12268233 |
ccctgaggttacacccacct |
12268252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 12425477 - 12425433
Alignment:
| Q |
132 |
tactttaagttagtgatcaaagaaacaatgaggttacacccacct |
176 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12425477 |
tacttgaagttagtgatcaaagaaaccctgaggttacacccacct |
12425433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 22986347 - 22986277
Alignment:
| Q |
321 |
gagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaag |
391 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||| |
|
|
| T |
22986347 |
gagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaag |
22986277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 22971999 - 22971949
Alignment:
| Q |
343 |
ttgatttcaaaggaaataattttgagtatattccttttggtgctggaagaa |
393 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
22971999 |
ttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaa |
22971949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 22946452 - 22946404
Alignment:
| Q |
343 |
ttgatttcaaaggaaataattttgagtatattccttttggtgctggaag |
391 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
22946452 |
ttgatttcaaaggaacaaattttgagtacattccatttggtgccggaag |
22946404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 55955161 - 55955105
Alignment:
| Q |
121 |
atgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccacctt |
177 |
Q |
| |
|
||||||| | |||||| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55955161 |
atgaacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccacctt |
55955105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 55955067 - 55954999
Alignment:
| Q |
218 |
catagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatcc |
286 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||| ||||| |||||||||||||| | | ||||||||| |
|
|
| T |
55955067 |
catagatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcc |
55954999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 393
Target Start/End: Complemental strand, 12637042 - 12636999
Alignment:
| Q |
350 |
caaaggaaataattttgagtatattccttttggtgctggaagaa |
393 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
12637042 |
caaaggaaataattttgagtacattccttttggtgcaggaagaa |
12636999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 393
Target Start/End: Complemental strand, 12609946 - 12609903
Alignment:
| Q |
350 |
caaaggaaataattttgagtatattccttttggtgctggaagaa |
393 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
12609946 |
caaagggaataattttgagtacattccctttggtgctggaagaa |
12609903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 15885922 - 15885964
Alignment:
| Q |
351 |
aaaggaaataattttgagtatattccttttggtgctggaagaa |
393 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
15885922 |
aaagggaataattttgagtacattccttttggttctggaagaa |
15885964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 393
Target Start/End: Original strand, 6722 - 6756
Alignment:
| Q |
359 |
taattttgagtatattccttttggtgctggaagaa |
393 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
6722 |
taattttgagtacattccttttggtgctggaagaa |
6756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1207 times since January 2019
Visitors: 6138