View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_52 (Length: 405)

Name: NF0830_low_52
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_52
NF0830_low_52
[»] chr7 (11 HSPs)
chr7 (203-370)||(46443958-46444125)
chr7 (94-186)||(46757438-46757530)
chr7 (94-200)||(27599211-27599317)
chr7 (158-201)||(46756269-46756312)
chr7 (94-201)||(27600037-27600144)
chr7 (90-201)||(46759200-46759311)
chr7 (97-186)||(12732261-12732350)
chr7 (154-201)||(41533895-41533942)
chr7 (154-201)||(45887278-45887325)
chr7 (154-200)||(44909361-44909407)
chr7 (97-161)||(40905070-40905134)
[»] chr1 (10 HSPs)
chr1 (9-200)||(11469081-11469270)
chr1 (27-200)||(14925222-14925390)
chr1 (90-193)||(11469703-11469806)
chr1 (90-201)||(14924673-14924784)
chr1 (90-201)||(31787477-31787588)
chr1 (90-203)||(31788214-31788327)
chr1 (94-171)||(7463444-7463521)
chr1 (94-171)||(11426882-11426959)
chr1 (105-171)||(37889908-37889974)
chr1 (100-201)||(51988411-51988513)
[»] chr8 (13 HSPs)
chr8 (9-200)||(12350510-12350702)
chr8 (90-200)||(12349967-12350077)
chr8 (90-200)||(43924956-43925066)
chr8 (94-200)||(43924490-43924596)
chr8 (92-201)||(43971277-43971386)
chr8 (97-178)||(39257656-39257737)
chr8 (90-177)||(43972024-43972111)
chr8 (94-170)||(38686333-38686409)
chr8 (97-146)||(38687000-38687049)
chr8 (94-151)||(39258391-39258448)
chr8 (145-200)||(32574801-32574856)
chr8 (134-200)||(41348915-41348981)
chr8 (94-146)||(33801553-33801605)
[»] chr4 (23 HSPs)
chr4 (9-200)||(6246784-6246973)
chr4 (90-200)||(6247408-6247519)
chr4 (90-195)||(10421519-10421624)
chr4 (27-152)||(10420965-10421085)
chr4 (90-196)||(15481508-15481614)
chr4 (94-200)||(15481035-15481141)
chr4 (94-200)||(30809447-30809553)
chr4 (94-201)||(45331395-45331502)
chr4 (97-200)||(30808621-30808724)
chr4 (94-140)||(50709719-50709765)
chr4 (295-360)||(51324233-51324298)
chr4 (132-200)||(232029-232097)
chr4 (90-186)||(6680280-6680376)
chr4 (94-166)||(50710359-50710431)
chr4 (154-201)||(12590205-12590252)
chr4 (154-193)||(47377600-47377639)
chr4 (154-200)||(231436-231482)
chr4 (154-200)||(47376852-47376898)
chr4 (97-166)||(53664246-53664315)
chr4 (154-186)||(36450742-36450774)
chr4 (154-186)||(41261136-41261168)
chr4 (94-186)||(45330579-45330671)
chr4 (94-146)||(53665028-53665080)
[»] scaffold0189 (2 HSPs)
scaffold0189 (27-200)||(12739-12907)
scaffold0189 (90-200)||(12184-12294)
[»] chr3 (7 HSPs)
chr3 (90-200)||(38337415-38337525)
chr3 (94-200)||(38336944-38337048)
chr3 (160-200)||(42108370-42108410)
chr3 (299-360)||(51292454-51292515)
chr3 (107-169)||(15450256-15450318)
chr3 (97-186)||(55124428-55124517)
chr3 (154-186)||(45501296-45501328)
[»] chr5 (7 HSPs)
chr5 (93-200)||(4554657-4554764)
chr5 (27-201)||(4555269-4555438)
chr5 (121-186)||(26712357-26712422)
chr5 (121-186)||(26982095-26982160)
chr5 (90-200)||(4820454-4820565)
chr5 (94-177)||(6804775-6804858)
chr5 (154-200)||(9142047-9142093)
[»] chr2 (17 HSPs)
chr2 (90-200)||(4993604-4993714)
chr2 (90-200)||(4975696-4975806)
chr2 (94-184)||(37545692-37545782)
chr2 (94-177)||(4976447-4976530)
chr2 (94-177)||(4994354-4994437)
chr2 (154-200)||(41985894-41985940)
chr2 (94-186)||(41519867-41519959)
chr2 (94-177)||(41768685-41768768)
chr2 (94-141)||(42369702-42369749)
chr2 (97-170)||(8536167-8536240)
chr2 (94-146)||(8536828-8536880)
chr2 (94-186)||(42370892-42370984)
chr2 (90-200)||(36718960-36719070)
chr2 (132-184)||(1271247-1271299)
chr2 (154-186)||(2307075-2307107)
chr2 (154-186)||(36390971-36391003)
chr2 (154-186)||(36391674-36391706)
[»] chr6 (3 HSPs)
chr6 (90-193)||(27763420-27763523)
chr6 (154-200)||(24125972-24126018)
chr6 (154-200)||(24126720-24126766)
[»] scaffold0071 (1 HSPs)
scaffold0071 (107-169)||(11873-11935)
[»] scaffold0119 (1 HSPs)
scaffold0119 (132-184)||(29938-29990)
[»] scaffold0041 (1 HSPs)
scaffold0041 (97-161)||(44884-44948)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 203 - 370
Target Start/End: Original strand, 46443958 - 46444125
Alignment:
Q  203 aagtgttagtatatagtttttctacacggttagaagccatattcaatgttatttagattggtttttcttgtcccaaagtcccggaaacaagaataaggga 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46443958 aagtgttagtatatagtttttctacacggttagaagccatattcaatgttatttagattggtttttcttgttccaaagtcccggaaacaagaataaggga 46444057  T
Q  303 aaattaaactcacttcccataaagtttagttaaacgtcacacacctcccctctagtttggaatattca 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46444058 aaattaaactcacttcccataaagtttagttaaacgtcacacacctcccctctagtttggaatattca 46444125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 46757530 - 46757438
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 186  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||| |||| |||   |||| ||||||||||||||||| | ||||||||    
T  46757530 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaactcctctttccca 46757438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 27599317 - 27599211
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 193  Q
    |||||||||||||||||||||| | | ||||| |||| | |||||||| ||||| |||  ||||||||||||| |||||||| ||||||||||  |||||    
T  27599317 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27599218  T
Q  194 cgccacc 200  Q
     ||||||    
T  27599217 tgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 46756312 - 46756269
Alignment:
Q  158 ccatggtggaaaacaacttccctttcccaaattaaacgccaccc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46756312 ccatggtggaaaacaacttccctttcccaaattaaacgccaccc 46756269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 27600037 - 27600144
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 193  Q
    |||||||||| ||||||||||| | | ||||| |||| | ||||| || ||||| |||  ||||||||||||| |||||||| ||||||||||  |||||    
T  27600037 tggtgttgagagtctatgataagaatgtgttcattacttaatctagtggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27600136  T
Q  194 cgccaccc 201  Q
     |||||||    
T  27600137 tgccaccc 27600144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 46759200 - 46759311
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    ||||||||||| ||| | ||| ||| ||||||||||| ||| |||||||||| |||| ||||| ||| | ||| ||| |||||||| |||||||||| |     
T  46759200 aatctggtgttaagtatgtataatagaagtatgttctctactttatctaatggtcaagattagctttgctatgatgggaaacaactcccctttcccatac 46759299  T
Q  190 taaacgccaccc 201  Q
    |||| |||||||    
T  46759300 taaatgccaccc 46759311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 12732350 - 12732261
Alignment:
Q  97 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 186  Q
    ||||||| ||||||||||||| |||||||||||| | |||||||| |||| |||   ||||||||||||| ||||   ||||||||||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaactctttccctttccca 12732261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 41533942 - 41533895
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccaccc 201  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||||    
T  41533942 tttcccatggtggaaaaaaacttacctttcccaaattaaacggcaccc 41533895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 45887325 - 45887278
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccaccc 201  Q
    ||||||||||||| ||| ||||  ||||||||||||||||||||||||    
T  45887325 tttcccatggtgggaaaaaactagcctttcccaaattaaacgccaccc 45887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 44909361 - 44909407
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    ||||||||||||| ||| ||||| |||||||||||||||||| ||||    
T  44909361 tttcccatggtgggaaaaaacttacctttcccaaattaaacggcacc 44909407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 40905134 - 40905070
Alignment:
Q  97 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccat 161  Q
    ||||||| ||| ||| ||||| |||||||||||| | |||||| |||||||||||  ||||||||    
T  40905134 tgttgagagtccatggtaaaaatatgttctttacttgatctaaggatcaaaattaactttcccat 40905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 11469270 - 11469081
Alignment:
Q  9 agcagagacagaaacgaaaaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnnntaatctggtgttgagtgtct 108  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||           |||||||||||||||||||    
T  11469270 agcagaaacagaaacgagaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatgaaaaaaaaa--aatctggtgttgagtgtct 11469173  T
Q  109 atgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||    
T  11469172 atgataaaagtatgttctctaccttatctaatggtcaaaattagctttcccatggtgggaaacaacttccctttcctaaattaaacgccacc 11469081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 14925222 - 14925390
Alignment:
Q  27 aaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnnntaatctggtgttgagtgtctatgataaaagtatgttct 126  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||    
T  14925222 aaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggaaaaa-----aatctggtgttgagtgtctatgataaaagtatgttct 14925316  T
Q  127 ttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
     ||  |||||||||| |||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  14925317 ctagtttatctaatggtcaaaattagctttcccatggtgggaaacaactttccttccccaaattaaacgccacc 14925390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 11469703 - 11469806
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    ||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| |||||||| |||||||||||||||||||||||    
T  11469703 aatctggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaacaacttccctttcccaaat 11469802  T
Q  190 taaa 193  Q
    ||||    
T  11469803 taaa 11469806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 14924784 - 14924673
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    |||||||||||||||||||||||||||| |||||||| ||  | || ||| | |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  14924784 aatctggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaat 14924685  T
Q  190 taaacgccaccc 201  Q
    ||||| ||||||    
T  14924684 taaacaccaccc 14924673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 31787588 - 31787477
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    |||||| |||||||| ||||||||||||||||||||| ||| |||||||||| |||||||||| ||| ||||||||| |||||||||||| |||||| |     
T  31787588 aatctgatgttgagtctctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatac 31787489  T
Q  190 taaacgccaccc 201  Q
    ||||||||||||    
T  31787488 taaacgccaccc 31787477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 31788214 - 31788327
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    |||||||||||||||||||||| |||||||||||||| ||  |||||||||| | |||||||  ||||||||||||| |||||||||| | |||||| |     
T  31788214 aatctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttctcattcccatac 31788313  T
Q  190 taaacgccacccga 203  Q
    |||||  |||||||    
T  31788314 taaacctcacccga 31788327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 7463521 - 7463444
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaac 171  Q
    |||||||||  ||||||||||||| | |||||||||  | |||||||| |||||||||| ||||||||||||| ||||    
T  7463521 tggtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaac 7463444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 11426959 - 11426882
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaac 171  Q
    |||||||||  ||||||||||||| | |||||||||  | |||||||| |||||||||| ||||||||||||| ||||    
T  11426959 tggtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 37889974 - 37889908
Alignment:
Q  105 gtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaac 171  Q
    ||||||||||||| | |||||||||  | |||||||| |||||||| | ||||||||||||| ||||    
T  37889974 gtctatgataaaactgtgttctttagttaatctaatggtcaaaattcgctttcccatggtgggaaac 37889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 51988411 - 51988513
Alignment:
Q  100 tgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattaga-tttcccatggtggaaaacaacttccctttcccaaattaaacgcca 198  Q
    |||||||||||||||| | |||| ||| ||  | |||||||| ||||||  | | ||||||||||||||||| || |  |||||||||||||||| ||||    
T  51988411 tgagtgtctatgataatattatgatctatatttgatctaatggtcaaaaaaatactttcccatggtggaaaagaagtctcctttcccaaattaaatgcca 51988510  T
Q  199 ccc 201  Q
    |||    
T  51988511 ccc 51988513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 12350510 - 12350702
Alignment:
Q  9 agcagagacagaaacgaaaaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnnntaa-tctggtgttgagtgtc 107  Q
    |||||| ||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||           || ||||||||||||||||    
T  12350510 agcagaaacagaaatgagaaggagagaaagaaaagagagttgggacagctacaagtggtgggccaatatggataaaaaaaaaaatctggtgttgagtgtc 12350609  T
Q  108 tatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  12350610 tatgataaaagtatgttctctaccttatctaatggtcaaaattaggtttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 12350702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 12350077 - 12349967
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||||| ||| ||||||||| ||||||||||||||||||||||    
T  12350077 aatctggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaat 12349978  T
Q  190 taaacgccacc 200  Q
    |||||||||||    
T  12349977 taaacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 43924956 - 43925066
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    |||||||||||||||||||||||||||| |||||||| ||  | |||||| | |||||||||  |||| |||||||| ||||||||||||||||||||||    
T  43924956 aatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaat 43925055  T
Q  190 taaacgccacc 200  Q
    |||||||||||    
T  43925056 taaacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 43924596 - 43924490
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 193  Q
    ||||||||||||| |||||||||| |||||||| ||  | |||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  43924596 tggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaa 43924497  T
Q  194 cgccacc 200  Q
     ||||||    
T  43924496 tgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 43971386 - 43971277
Alignment:
Q  92 tctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaatta 191  Q
    |||| |||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||| ||||||||||||| |||||||||| | || ||| | ||    
T  43971386 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttctcatttccatacta 43971287  T
Q  192 aacgccaccc 201  Q
    ||||||||||    
T  43971286 aacgccaccc 43971277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 39257737 - 39257656
Alignment:
Q  97 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttcc 178  Q
    |||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||| ||||||||||||| |||||||||||    
T  39257737 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttcc 39257656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 43972024 - 43972111
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 177  Q
    |||||||||||||||||||||| |||||||||||||| ||  |||||||||| | |||||||  |||||||| |||| ||||||||||    
T  43972024 aatctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 43972111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 38686409 - 38686333
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaa 170  Q
    ||||||||||||||||||||||||  ||||||| ||| |||||||||| |||| |||   |||||||||||||||||    
T  38686409 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatggtggaaaa 38686333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 38687000 - 38687049
Alignment:
Q  97 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaa 146  Q
    |||||||||||||||||||||  ||||||| ||| |||||||||||||||    
T  38687000 tgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaa 38687049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 39258391 - 39258448
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaatta 151  Q
    |||||||||||||||| | |||||||||||||||||  |||||||||| | |||||||    
T  39258391 tggtgttgagtgtctacggtaaaagtatgttctttagtttatctaatggttaaaatta 39258448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 32574801 - 32574856
Alignment:
Q  145 aaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    |||||||| ||| ||||||||| |||||||||| | |||||| |||||||||||||    
T  32574801 aaaattagctttaccatggtgggaaacaacttctcattcccatattaaacgccacc 32574856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 41348915 - 41348981
Alignment:
Q  134 atctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    |||||| ||||||||  | ||||||||| |||||||| ||||  |||||||||||||||||| ||||    
T  41348915 atctaacgatcaaaaaaacatttcccatagtggaaaaaaactagcctttcccaaattaaacggcacc 41348981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 33801605 - 33801553
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaa 146  Q
    ||||||||||||||||||||||||  ||||||| ||| |||| ||||| ||||    
T  33801605 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 33801553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 6246973 - 6246784
Alignment:
Q  9 agcagagacagaaacgaaaaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnnntaatctggtgttgagtgtct 108  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||           |||  | ||||||||||||    
T  6246973 agcagaaacagaaacgagaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggaaaaaaaaaaaat--gatgttgagtgtct 6246876  T
Q  109 atgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    |||||||||||||||||| |||||||||||||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  6246875 atgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 6247408 - 6247519
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaa-gtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaa 188  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| ||  |||||||||||||||||||||    
T  6247408 aatctggtgttgagtgtctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttccctttcccaaa 6247507  T
Q  189 ttaaacgccacc 200  Q
    ||||||||||||    
T  6247508 ttaaacgccacc 6247519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 10421519 - 10421624
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    |||||||||||||||||||||||||||| |||||||| ||  | |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  10421519 aatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaat 10421618  T
Q  190 taaacg 195  Q
    ||||||    
T  10421619 taaacg 10421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 10421085 - 10420965
Alignment:
Q  27 aaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnnntaatctggtgttgagtgtctatgataaaagtatgttct 126  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| |||||||           ||||||||||||||||||||||||||||||||||| |    
T  10421085 aaggagagaaagaaaagagagttggggcagctgcaagtggtgggtcaatatggaaaaa-----aatctggtgttgagtgtctatgataaaagtatgttat 10420991  T
Q  127 ttaccttatctaatgatcaaaattag 152  Q
     ||  |||||||||| ||||||||||    
T  10420990 ctagtttatctaatggtcaaaattag 10420965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 15481508 - 15481614
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    ||||||||||||||| |||||||||||| |||||||| ||  | |||||  | |||||||||| |||||||| |||| |||||||||||||||| |||||    
T  15481508 aatctggtgttgagtttctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaacttccctttcgcaaat 15481607  T
Q  190 taaacgc 196  Q
    |||||||    
T  15481608 taaacgc 15481614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 15481141 - 15481035
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 193  Q
    |||||||||| ||||||||||||| |||||||| ||  | |||||| | |||||||||| |||||||||  || |||||||||||||| |||||||||||    
T  15481141 tggtgttgagagtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaacttcccttccccaaattaaa 15481042  T
Q  194 cgccacc 200  Q
    || ||||    
T  15481041 cgtcacc 15481035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 30809447 - 30809553
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 193  Q
    |||||||||| ||||||||||||| | ||||| |||| | ||||| || ||||| |||  |||| ||||||||||||||||| ||||||||||  |||||    
T  30809447 tggtgttgagagtctatgataaaaatgtgttcattacttaatctagtggtcaaatttaactttctcatggtggaaaacaactcccctttcccattttaaa 30809546  T
Q  194 cgccacc 200  Q
     ||||||    
T  30809547 tgccacc 30809553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 45331395 - 45331502
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 193  Q
    |||||||||||||||||||||| | | ||||| |||| | |||||||| ||||| |||  |||| |||||||| |||||||| ||||||| ||  |||||    
T  45331395 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttctcatggtgggaaacaactcccctttctcattttaaa 45331494  T
Q  194 cgccaccc 201  Q
     |||||||    
T  45331495 tgccaccc 45331502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 30808724 - 30808621
Alignment:
Q  97 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgc 196  Q
    ||||||||||||||||||| | | | ||| |||| | |||||||| ||||| |||  ||||||||||||| ||||||||  |||||||||  ||||| ||    
T  30808724 tgttgagtgtctatgataagaatgtattcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactctcctttcccattttaaatgc 30808625  T
Q  197 cacc 200  Q
    ||||    
T  30808624 cacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 50709765 - 50709719
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaat 140  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||    
T  50709765 tggtgttgagtgtctatgataaaactatgttctctactttatctaat 50709719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 51324298 - 51324233
Alignment:
Q  295 ataagggaaaattaaactcacttcccataaagtttagttaaacgtcacacacctcccctctagttt 360  Q
    |||||||||||||| |||||| ||||  ||||||||| ||||  ||||||||||| ||||||||||    
T  51324298 ataagggaaaattacactcacctcccccaaagtttagctaaatatcacacacctctcctctagttt 51324233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 232029 - 232097
Alignment:
Q  132 ttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    |||||||||| | ||||||   ||||||||||||| ||||||||||||||||||| | ||||| |||||    
T  232029 ttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaaccccacc 232097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 6680280 - 6680376
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 186  Q
    ||||| ||||||||  |||||||||||| |||||||||||| | |||||||| |||| |||   ||||||||||||  ||||   ||||||||||||    
T  6680280 aatctagtgttgagaatctatgataaaactatgttctttacttaatctaatggtcaatatttactttcccatggtgagaaactctttccctttccca 6680376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 50710359 - 50710431
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtgg 166  Q
    |||||||||||||||||||||||   ||||||| ||| |||||||||| |||| |||   |||||||||||||    
T  50710359 tggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatggtgg 50710431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 12590205 - 12590252
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccaccc 201  Q
    ||||||||||||||||| ||||  ||||||||||||||||| ||||||    
T  12590205 tttcccatggtggaaaaaaactagcctttcccaaattaaaccccaccc 12590252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 47377600 - 47377639
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaa 193  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  47377600 tttcccatggtgggaaacaactcccctttcccaaattaaa 47377639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 231482 - 231436
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    ||||||||||| ||||||||||||||||||||| | ||||| |||||    
T  231482 tttcccatggtagaaaacaacttccctttcccatactaaaccccacc 231436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 47376898 - 47376852
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    ||||||||| ||| |||||||| ||||||||||||||||| ||||||    
T  47376898 tttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 53664315 - 53664246
Alignment:
Q  97 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtgg 166  Q
    |||||||||||||||||||||  ||||||| ||  |||||||||| |||| |||   |||||||||||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgg 53664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 36450774 - 36450742
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttccca 186  Q
    |||||||||||||||||||||| ||||||||||    
T  36450774 tttcccatggtggaaaacaactcccctttccca 36450742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 41261168 - 41261136
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttccca 186  Q
    ||||||||||||||||||||||| |||||||||    
T  41261168 tttcccatggtggaaaacaactttcctttccca 41261136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 45330671 - 45330579
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 186  Q
    |||||||||| ||||||||||| | | | ||| |||| | ||||| || ||||| |||  ||| ||||||||| |||||||| ||||||||||    
T  45330671 tggtgttgagagtctatgataagaatgtattcattacttaatctagtggtcaaatttaacttttccatggtgggaaacaactcccctttccca 45330579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 53665028 - 53665080
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaa 146  Q
    ||||||||||||||||||||||||  ||||||| ||| |||| ||||| ||||    
T  53665028 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 53665080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 12739 - 12907
Alignment:
Q  27 aaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnnntaatctggtgttgagtgtctatgataaaagtatgttct 126  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||           ||  |||||||||||||||||||||||||||||||||    
T  12739 aaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggaaaaa-----aaaatggtgttgagtgtctatgataaaagtatgttct 12833  T
Q  127 ttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
     ||  |||||||||| |||||||||  ||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  12834 ctagtttatctaatggtcaaaattaactttcccatggtgggaaacaacttcacttccccaaattaaacgccacc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 12294 - 12184
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    |||||| ||||||||||||||||||||| |||||||| ||  | |||||| | |||||||||  |||| |||||||| |||||||||| |||||||||||    
T  12294 aatctgatgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaacttctctttcccaaat 12195  T
Q  190 taaacgccacc 200  Q
    |||||||||||    
T  12194 taaacgccacc 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 38337415 - 38337525
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    |||||||||||||||||||||||||||| |||||||| ||  | |||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  38337415 aatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaat 38337514  T
Q  190 taaacgccacc 200  Q
    |||||||||||    
T  38337515 taaacgccacc 38337525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 38337048 - 38336944
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 193  Q
    |||||||||||||||  ||||||| |||||||| ||  | |||||| | |||||||||| ||||||||||||| |||||||||||||| |||||||||||    
T  38337048 tggtgttgagtgtct--gataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttccccaaattaaa 38336951  T
Q  194 cgccacc 200  Q
     ||||||    
T  38336950 tgccacc 38336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 42108410 - 42108370
Alignment:
Q  160 atggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaacgccacc 42108370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 51292515 - 51292454
Alignment:
Q  299 gggaaaattaaactcacttcccataaagtttagttaaacgtcacacacctcccctctagttt 360  Q
    |||||||||| |  ||| |||| ||| ||||||||||| |||||||||||||||||||||||    
T  51292515 gggaaaattacaaccacctcccctaaggtttagttaaatgtcacacacctcccctctagttt 51292454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 15450318 - 15450256
Alignment:
Q  107 ctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaa 169  Q
    ||||||||||| |||||||| ||| | |||||||| |||| ||||  ||||||||||||||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 15450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 55124517 - 55124428
Alignment:
Q  97 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 186  Q
    |||||||  |||||||||||| |||||||||||| | |||||||  |||| |||   ||||||||||||| ||||   ||||||||||||    
T  55124517 tgttgagaatctatgataaaactatgttctttacatgatctaatagtcaatatttattttcccatggtgggaaactctttccctttccca 55124428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 45501296 - 45501328
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttccca 186  Q
    |||||||||||||||||||||| ||||||||||    
T  45501296 tttcccatggtggaaaacaactcccctttccca 45501328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 4554764 - 4554657
Alignment:
Q  93 ctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaa 192  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||| ||||||||||||||| || ||||||||| | |||    
T  4554764 ctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttcccatactaa 4554665  T
Q  193 acgccacc 200  Q
    || |||||    
T  4554664 accccacc 4554657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 4555269 - 4555438
Alignment:
Q  27 aaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnnntaatctggtgttgagtgtctatgataaaagtatgttct 126  Q
    ||||| ||||| |||||||| |||||||||||||||| ||||||||||||||           ||| |||||||||||||||| ||||||||||||||||    
T  4555269 aaggaaagaaataaaagagagttgggacagctgcaagcggtgggccaatatggaaaaaa----aat-tggtgttgagtgtctacgataaaagtatgttct 4555363  T
Q  127 ttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccaccc 201  Q
      || ||||| || | |||||||||| ||||||||||| | ||||||||||||||||||| | |||| |||||||    
T  4555364 ccactttatccaacgttcaaaattagctttcccatggtaggaaacaacttccctttcccatactaaatgccaccc 4555438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 26712357 - 26712422
Alignment:
Q  121 tgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 186  Q
    |||||||||| | |||| ||| | |||||||| ||||||||||||| |||||||||||||||||||    
T  26712357 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26712422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 26982095 - 26982160
Alignment:
Q  121 tgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 186  Q
    |||||||||| | |||| ||| | |||||||| ||||||||||||| |||||||||||||||||||    
T  26982095 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 4820565 - 4820454
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattaga-tttcccatggtggaaaacaacttccctttcccaaa 188  Q
    ||||| |||||||||||| ||||||||| ||||||  ||||   ||||||||  |||||  | | |||||||||||||||||||| ||||||||||||      
T  4820565 aatcttgtgttgagtgtccatgataaaattatgtttcttactcaatctaatggacaaaaaaaaaatttcccatggtggaaaacaatttccctttcccatg 4820466  T
Q  189 ttaaacgccacc 200  Q
    |||||| |||||    
T  4820465 ttaaaccccacc 4820454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 6804775 - 6804858
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 177  Q
    |||||||||| | |||||||||   | |||||||||||| |||||||| ||||||||   ||||||||||||| ||||||||||    
T  6804775 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 6804858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 9142093 - 9142047
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    ||||||||||||| ||||||||||||||||||| | |||| ||||||    
T  9142093 tttcccatggtgggaaacaacttccctttcccatactaaatgccacc 9142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 4993714 - 4993604
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    |||||| |||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||| ||| |||||||||||||||||||||| |||||| |     
T  4993714 aatctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttcccattcccatac 4993615  T
Q  190 taaacgccacc 200  Q
    |||||||||||    
T  4993614 taaacgccacc 4993604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 4975806 - 4975696
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    |||||| |||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||| ||| ||||||||| |||||||||||| |||||| |     
T  4975806 aatctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatac 4975707  T
Q  190 taaacgccacc 200  Q
    |||||||||||    
T  4975706 taaacgccacc 4975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 37545782 - 37545692
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcc 184  Q
    |||||||||||||||||||||| | | ||||| |||| | |||||||| ||||| |||  ||||||||||||| |||||||||||||||||    
T  37545782 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaacttccctttcc 37545692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 4976447 - 4976530
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 177  Q
    |||||||||||||||||| |||||||||||||| ||  |||||||||| | |||||||  |||||||| |||| ||||||||||    
T  4976447 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 4994354 - 4994437
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 177  Q
    |||||||||||||||||| |||||||||||||| ||  |||||||||| | |||||||  |||||||| |||| ||||||||||    
T  4994354 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4994437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 41985894 - 41985940
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  41985894 tttctcatggtggaaaacaacttccctttcccaaattaaacgccacc 41985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 41519867 - 41519959
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 186  Q
    |||||||| ||||||||| |||||||||||||| ||| |||| ||| | ||||||  |  ||||||||||||| ||| |||||||||||||||    
T  41519867 tggtgttgggtgtctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttccctttccca 41519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 41768685 - 41768768
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 177  Q
    |||||||||| | |||||||||   | |||||||||||| |||||||| ||||||||   ||||||||||||| ||||||||||    
T  41768685 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 41768768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 42369749 - 42369702
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatg 141  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  42369749 tggtgttgagtgtctatgataaaattatgttctctactttatctaatg 42369702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 8536240 - 8536167
Alignment:
Q  97 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaa 170  Q
    |||||||||||||||||||||  ||||||| ||| |||||||||  |||| |||   |||||||||||||||||    
T  8536240 tgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatggtggaaaa 8536167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 8536828 - 8536880
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaa 146  Q
    ||||||||||||||||||||||||  ||||||| ||| |||||||||| ||||    
T  8536828 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaa 8536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 42370892 - 42370984
Alignment:
Q  94 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 186  Q
    |||||| ||||||||||||||||| ||| ||||  || ||||||||||  ||| |||   ||||||||||||| ||||||||| || ||||||    
T  42370892 tggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactttccattccca 42370984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 36718960 - 36719070
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    ||||| ||||| | |||||||||||||||||||||  |||  | || ||||| | |||||||| ||||| ||||| | |||||| || ||||||||| |     
T  36718960 aatcttgtgttcaatgtctatgataaaagtatgtttcttatttaatttaatggttaaaattagctttcctatggtaggaaacaagtttcctttcccatac 36719059  T
Q  190 taaacgccacc 200  Q
    |||| ||||||    
T  36719060 taaatgccacc 36719070  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 1271299 - 1271247
Alignment:
Q  132 ttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcc 184  Q
    |||||||| | | |||||||| |||||||| |||||||||||||| |||||||    
T  1271299 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 1271247  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 2307075 - 2307107
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttccca 186  Q
    |||| ||||||||||||||||||||||||||||    
T  2307075 tttctcatggtggaaaacaacttccctttccca 2307107  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 36391003 - 36390971
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttccca 186  Q
    ||||||||||||| |||||||||||||||||||    
T  36391003 tttcccatggtgggaaacaacttccctttccca 36390971  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 36391674 - 36391706
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttccca 186  Q
    |||||||||||||||||||||| ||||||||||    
T  36391674 tttcccatggtggaaaacaactcccctttccca 36391706  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 27763523 - 27763420
Alignment:
Q  90 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 189  Q
    ||||||||||||||||||| |||||||| |||||||| ||  | |||||| | |||||||||| |||||| |||||| |||||||||||||| |||||||    
T  27763523 aatctggtgttgagtgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaacttcccttccccaaat 27763424  T
Q  190 taaa 193  Q
    ||||    
T  27763423 taaa 27763420  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 24126018 - 24125972
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  24126018 tttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 24126720 - 24126766
Alignment:
Q  154 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 200  Q
    ||||||||| ||| |||||||| ||||||||||||||||| ||||||    
T  24126720 tttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 11873 - 11935
Alignment:
Q  107 ctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaa 169  Q
    ||||||||||| |||||||| ||| | |||||||| |||| ||||  ||||||||||||||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 11935  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 29938 - 29990
Alignment:
Q  132 ttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcc 184  Q
    |||||||| | | |||||||| |||||||| |||||||||||||| |||||||    
T  29938 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 29990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 44884 - 44948
Alignment:
Q  97 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccat 161  Q
    ||||||| ||| ||| ||||| |||||||||||| | |||||| |||||||||||  ||||||||    
T  44884 tgttgagagtccatggtaaaaatatgttctttacttgatctaaggatcaaaattaactttcccat 44948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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