View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_low_56 (Length: 403)
Name: NF0830_low_56
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_56 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 35171919 - 35171526
Alignment:
| Q |
1 |
accgaaagcacttcaagtattatcacaggttgtggaaagtaaaaaaggatgataatgttcaataaatga-ctactgtatgtatgtaggagagtatctagc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35171919 |
accgaaagcacttcaagtattatcacaggttgtggaaagtaaaaaaggatgataatgttaaataaatgaactactgtatgtatgtaggagagtatctagc |
35171820 |
T |
|
| Q |
100 |
agcagcaagactcaaaaacttacaaatagacatgtatatatgttagtatgtagaatattaatacctgtaattgatgcatcatgttttcctgtttgatttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35171819 |
agcagcaagactcaaaaacttacaaatagacatgtatatatgttagtatgtagaatattaatacctgtaattgatgcatcatgttttcctgtttgatttc |
35171720 |
T |
|
| Q |
200 |
aatatctgaaagttgattccgaatacatgtcatttcatttgccctttgtaaacaacattgatgtataatttggggacttgattcggtgactgtagaatca |
299 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35171719 |
aatatctgaaagttgattccgaatacaagtcatttcatttgccctttgtaaacaacattgatgtgtaatttggggacttgattcggtgactgtagaatca |
35171620 |
T |
|
| Q |
300 |
gaacttttaggatcctgcatctttatggagtacatttgttcattgcagcttattccttcacctaaccgttggcttctcccatttggcttctgtg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35171619 |
gaacttttaggatcctgcatctttatggagtcaatttgttcattgcagcttattccttcatctaaccgttggcttctcccatttggcttctgtg |
35171526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2741 times since January 2019
Visitors: 6167