View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_57 (Length: 397)
Name: NF0830_low_57
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 28 - 386
Target Start/End: Original strand, 38287378 - 38287734
Alignment:
| Q |
28 |
gtctgtgcgtatgatatcactttgtactggttccaaattgtataggagtggtactactctacccttttccattttccttaatacatatatagacacacaa |
127 |
Q |
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| T |
38287378 |
gtctgtgcgtatgatatcactttgtactggttccaaattgtataggagtggtactactctacccttttccattttccttaatacgtatatagacacacaa |
38287477 |
T |
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| Q |
128 |
atacacacacattcatgtcaggagaaaatatactcgtaaattaagaatgcaatannnnnnngtgttaaccctctggtttctcaggaaaaagaggttcggt |
227 |
Q |
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| T |
38287478 |
ataaacacacattcatg-caggagaaaatatactcgtaaattaagaatgcaatatttttt-gtgttaaccctctggtttctcagaaaaaagaggttcggt |
38287575 |
T |
|
| Q |
228 |
catcaggcaaggataatctaaccaataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttga |
327 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||| |
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| T |
38287576 |
catcagacaaggataatctaatcaataattgtttaacttaagaatcgaattcggattcttccaaacgattcgtcattgctgaaactcattaaccacttga |
38287675 |
T |
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| Q |
328 |
gttctattgcttgattaggaatgcaaaatttgttactggaaaaaacgacttacatatta |
386 |
Q |
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| T |
38287676 |
gttctattgcttgattaggaatgcaaaatttgttactagaaaaaacgacttacatatta |
38287734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 39844041 - 39843995
Alignment:
| Q |
282 |
attctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
328 |
Q |
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| T |
39844041 |
attctttcgaatgattcgtctttggtgaagttcatttaccacttgag |
39843995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 13043501 - 13043549
Alignment:
| Q |
292 |
acgattcgtctttgctgaaattcattaaccacttgagttctattgcttg |
340 |
Q |
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| T |
13043501 |
acgattcgtccttgatgaaactcattaaccacttgagctcaattgcttg |
13043549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 34548585 - 34548528
Alignment:
| Q |
270 |
aatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttga |
327 |
Q |
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| T |
34548585 |
aatcgaattcgggttattccgaacgactcgtctttgatgaagttcattaatcacttga |
34548528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 24363853 - 24363805
Alignment:
| Q |
280 |
ggattctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
328 |
Q |
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| T |
24363853 |
ggattcttccaaacgattcgtccttggtgaaattaattaaccacttgag |
24363805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 8509732 - 8509644
Alignment:
| Q |
250 |
caataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttgagttctattgct |
338 |
Q |
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|||||||||||| | || |||||||||| ||||||| | ||| |||| || ||| ||||| |||||||| |||||||||| |||||| |
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| T |
8509732 |
caataattgttttatctaagaatcgaatttggattctcccaaacaattcatcattgatgaaactcattaactacttgagttcgattgct |
8509644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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