View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_62 (Length: 378)
Name: NF0830_low_62
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_62 |
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| [»] scaffold0386 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 6073619 - 6073982
Alignment:
| Q |
1 |
tatacatcaggatgcagattaccaattcttgaatcaatacccaagaaatatttattgagacaatgnnnnnnnnn-cttattgagccaatgggtaaataaa |
99 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
6073619 |
tatacatcaggatgcaaattaccaattcttgaaccaatacccaagaaatatttattgagacaatgttttttttttcttattgacccaatgggtaaataaa |
6073718 |
T |
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| Q |
100 |
ggaacacgtgtgtaaatgattgtaggaggttgataatcattagaatgatggtagaaacttatatatagtggtttgcaaagtatatgtcaatttcagagct |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6073719 |
ggaacatgtgtgtaaatgattgtaggaggttgataatcattagcatgatggtagaaacttatatatagtggtttgcaaagtatatgtcaatttcagagct |
6073818 |
T |
|
| Q |
200 |
caagtattgtggtacaatttttgcatgcatgtatagaataatcgagattatggtcccaaaatgatgattgtaaaatgaaataggaattttatgctgtata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
6073819 |
caagtattgtggtacaatttttgcatgcatgtatagaataatcgagattatggtcccagaatgatgattgtaaaatgaaataggaattttatgctctata |
6073918 |
T |
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| Q |
300 |
atatgtcttttgagagccacatgatgtcttcagatacatatgtttgattaatccttgaatatat |
363 |
Q |
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| T |
6073919 |
atatgtcttttgagagccacatgatgtcttcagatacatatgtttgattaatccttgaatatat |
6073982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 92 - 363
Target Start/End: Original strand, 6069084 - 6069352
Alignment:
| Q |
92 |
taaataaaggaacacgtgtgtaaatgattgtaggaggttgataatcattagaatgatggtagaaacttatatatagtggtttgcaaagtatatgtcaatt |
191 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
6069084 |
taaataaaggaacatgtgtgtaaatgattgtaggaggttgatgatgattagcatgattgtagaaacttatatatagtagttcgcaaagtatatgtcaatt |
6069183 |
T |
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| Q |
192 |
tcagagctcaagtattgtggtacaatttttgcatgcatgtatagaataatcgagattatggtcccaaaatgatgattgtaaaatgaaataggaattttat |
291 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
6069184 |
tcagtgctcaagtattgtggtacaatttttgcatgcatgcatagaataaacaagattatggtccc-aaatgatgattgtaaaatgaaataggaatgttat |
6069282 |
T |
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| Q |
292 |
gctgtataatatgtcttttgagagccacatgatgtcttcagatacatatgtttgattaatccttgaatatat |
363 |
Q |
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| T |
6069283 |
gctcaataatatgccttttgagagccaccccatatcttcagatac--atgtttgattaatacttgaatatat |
6069352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 5697656 - 5697553
Alignment:
| Q |
92 |
taaataaaggaacacgtgtgtaaatgattgtaggaggttgataatcattagaatgatggtagaaacttata--tatagtggtttgcaaagtatatgtcaa |
189 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| || ||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
5697656 |
taaataaaggaacatgtgtgtaaatgattgtaggaggctgatgatgattagcatgattgtagaaacttatatatatagtggtatgcaaagtatatgtcaa |
5697557 |
T |
|
| Q |
190 |
tttc |
193 |
Q |
| |
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|||| |
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| T |
5697556 |
tttc |
5697553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 6069020 - 6069078
Alignment:
| Q |
7 |
tcaggatgcagattaccaattcttgaatcaatacccaagaaatatttattgagacaatg |
65 |
Q |
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| T |
6069020 |
tcaggatgcagattaccaattcttgaaccaatacacaagaaatatttattgaggcaatg |
6069078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 5697716 - 5697668
Alignment:
| Q |
11 |
gatgcagattaccaattcttgaatcaatacccaagaaatatttattgag |
59 |
Q |
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| T |
5697716 |
gatgcagattaccaattcttaaaccaatacacaagaaatatttattgag |
5697668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 95 - 292
Target Start/End: Original strand, 312 - 509
Alignment:
| Q |
95 |
ataaaggaacacgtgtgtaaatgattgtaggaggttgataatcattagaatgatggtagaaacttatatatagtggtttgcaaagtatatgtcaatttca |
194 |
Q |
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||||||||| | ||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
312 |
ataaaggaatatgtgtgtaaatgattgtaggaggttgatgatgattagcatgattgtagaaacttatatatagtggtttgcaaagtttatgtcaatttca |
411 |
T |
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| Q |
195 |
gagctcaagtattgtggtacaatttttgcatgcatgtatagaataatcgagattatggtcccaaaatgatgattgtaaaatgaaataggaattttatg |
292 |
Q |
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| T |
412 |
gtgctcaagtgttgtggtacaatttttgcatgcatgtatagaataatcgagactatggtccgaaaatgatgattcaaaaatgaaataggaatgttatg |
509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 251 - 299
Alignment:
| Q |
11 |
gatgcagattaccaattcttgaatcaatacccaagaaatatttattgag |
59 |
Q |
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| T |
251 |
gatgcagattaccaattcttaaaccaatacataagaaatatttattgag |
299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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