View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_63 (Length: 375)

Name: NF0830_low_63
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_63
NF0830_low_63
[»] chr1 (15 HSPs)
chr1 (1-346)||(17050568-17050913)
chr1 (1-346)||(12925988-12926335)
chr1 (1-346)||(20794404-20794737)
chr1 (90-346)||(40649260-40649516)
chr1 (97-223)||(31389909-31390034)
chr1 (39-99)||(38930478-38930538)
chr1 (39-99)||(16270374-16270434)
chr1 (39-99)||(16270971-16271031)
chr1 (39-99)||(38931068-38931128)
chr1 (39-99)||(51975049-51975109)
chr1 (39-99)||(6076690-6076750)
chr1 (39-99)||(9948725-9948784)
chr1 (39-99)||(48971871-48971931)
chr1 (39-81)||(51974603-51974645)
chr1 (39-92)||(48972274-48972327)
[»] chr7 (6 HSPs)
chr7 (1-346)||(32859348-32859678)
chr7 (39-99)||(668925-668985)
chr7 (39-99)||(668345-668405)
chr7 (39-99)||(38072064-38072124)
chr7 (39-99)||(7677583-7677643)
chr7 (41-99)||(4261420-4261478)
[»] chr3 (18 HSPs)
chr3 (63-346)||(8439828-8440113)
chr3 (63-346)||(8436283-8436568)
chr3 (39-99)||(38923487-38923547)
chr3 (7-93)||(45500594-45500684)
chr3 (39-99)||(38922909-38922969)
chr3 (39-99)||(41756254-41756314)
chr3 (39-99)||(44686420-44686480)
chr3 (39-99)||(45242809-45242869)
chr3 (39-99)||(52492052-52492112)
chr3 (40-99)||(45242233-45242292)
chr3 (39-99)||(3971158-3971218)
chr3 (39-99)||(3998663-3998723)
chr3 (39-99)||(36750260-36750320)
chr3 (42-81)||(45501136-45501175)
chr3 (39-81)||(41755665-41755707)
chr3 (39-81)||(44687003-44687045)
chr3 (40-81)||(3971745-3971786)
chr3 (40-81)||(3998092-3998133)
[»] chr4 (15 HSPs)
chr4 (39-99)||(26610512-26610572)
chr4 (39-99)||(10424289-10424349)
chr4 (39-99)||(21165613-21165673)
chr4 (39-99)||(26611105-26611165)
chr4 (39-99)||(29651154-29651214)
chr4 (39-101)||(10424879-10424941)
chr4 (43-101)||(45235780-45235838)
chr4 (39-92)||(31836288-31836341)
chr4 (39-99)||(36865540-36865600)
chr4 (39-99)||(39522541-39522601)
chr4 (40-99)||(29650581-29650640)
chr4 (40-81)||(45230532-45230573)
chr4 (39-94)||(31835314-31835368)
chr4 (39-82)||(36864981-36865024)
chr4 (39-81)||(21166215-21166257)
[»] chr8 (8 HSPs)
chr8 (39-99)||(32537310-32537370)
chr8 (40-99)||(32536872-32536931)
chr8 (39-99)||(37639877-37639937)
chr8 (39-99)||(38023790-38023850)
chr8 (39-99)||(38024353-38024413)
chr8 (39-94)||(41859924-41859978)
chr8 (39-81)||(41859476-41859518)
chr8 (39-91)||(37640427-37640479)
[»] chr6 (10 HSPs)
chr6 (121-193)||(8383687-8383759)
chr6 (39-99)||(15083140-15083200)
chr6 (39-99)||(22580646-22580706)
chr6 (39-99)||(22587132-22587192)
chr6 (39-99)||(33479863-33479923)
chr6 (39-101)||(22580101-22580163)
chr6 (39-99)||(1034970-1035030)
chr6 (40-99)||(15082564-15082623)
chr6 (39-81)||(33480468-33480510)
chr6 (39-81)||(9427876-9427918)
[»] chr5 (5 HSPs)
chr5 (39-99)||(33002638-33002698)
chr5 (39-99)||(15183255-15183315)
chr5 (39-81)||(686582-686624)
chr5 (39-81)||(687188-687230)
chr5 (39-81)||(15183857-15183899)
[»] chr2 (3 HSPs)
chr2 (39-99)||(21471183-21471243)
chr2 (39-81)||(37548166-37548208)
chr2 (39-92)||(21471783-21471836)
[»] scaffold0041 (1 HSPs)
scaffold0041 (39-97)||(27437-27495)
[»] scaffold0311 (1 HSPs)
scaffold0311 (39-79)||(1-41)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 17050568 - 17050913
Alignment:
Q  1 tttacactatcttccaccctctcactatcatgtctccacaccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacaccat 100  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17050568 tttacactatcttccaccctctctctttcatgtccccacaccaccaccaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacaccat 17050667  T
Q  101 ccatttcttacgattgtaagaggttccaaaatgaaaatcaattttcaataattagacatgaaaaaattaaaatctaccattaatgttgaaaaaggttgtt 200  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17050668 ccatttcttacgattgtaacaggttccaaaatgaaaaccaattttcaataattagacatgaaaaaactaaaatctaccattaatgttgaaaaaggttgtt 17050767  T
Q  201 tcagtatcaataaccatgacatcacggtgaatgtggacaaacaatttaatatgttcttctttgataaatatgttctcaaaactaaaatccaccattcaag 300  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  17050768 tcagtatcaataaccatgatatcacggtgaatatggacaaacgatttaataagttcttctttggtgaatatgttctcaaaactaaaatccaccattcaag 17050867  T
Q  301 aaatttttgatccaaaattttttatgttcttctttggtgtgattta 346  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||    
T  17050868 aaatttctgatccaaatttttttatgttcttctttggtgtgattta 17050913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 12925988 - 12926335
Alignment:
Q  1 tttacactatcttccaccctctcactatcatgtctccacaccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacaccat 100  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  12925988 tttacactatcttccaccctctctctttcatgtccccacaccaccaccaaatcacatattcagcaaccactttgaccaacatcgcaccgccacacaccat 12926087  T
Q  101 ccatttcttacgattgtaagaggttccaaaatgaaaatcaattttcaataattagacatgaaaaaattaaaatctaccattaatgttgaaaaaggttgtt 200  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12926088 ccatttcttacgattgtaacatgttccaaaatgaaaaccaattttcaattattagacatgaaaaaactaaaatctaccattaatgttgaaaaaggttgtt 12926187  T
Q  201 tcagtatcaataaccatgacatcacggtgaatgtggacaaacaatttaatatgttcttctttgat--aaatatgttctcaaaactaaaatccaccattca 298  Q
    ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |  | ||||||| |||||||||||||||||||||||    
T  12926188 tcagtatcaataaccatgacatctcggtgaatatggacaaacgatttaatatgttcttctttggtgaatatatgttttcaaaactaaaatccaccattca 12926287  T
Q  299 agaaatttttgatccaaaattttttatgttcttctttggtgtgattta 346  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  12926288 agaaatttctgatccaaaattttttatgttcttctttggtgtgattta 12926335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 20794404 - 20794737
Alignment:
Q  1 tttacactatcttccaccctctcactatcatgtctccacaccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacaccat 100  Q
    |||||||||| |||||||||||| || ||||||| |||||||||||  |||||||||||| |||||||||||||||||||||           |||||||    
T  20794404 tttacactattttccaccctctctctttcatgtccccacaccaccataaaatcacatatttagcaaccactttgaccaccat-----------acaccat 20794492  T
Q  101 ccatttcttacgattgtaagaggttccaaaatgaaaatcaattttcaataattagacatgaaaaaattaaaatctaccattaatgttgaaaaaggttgtt 200  Q
    ||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  20794493 ccatttcttacgattgtaacag-ttccaagatgaaaaccaattttcaataattagacatgaaaaaactaaaatctatcattaatgttgaaaaaagttgtt 20794591  T
Q  201 tcagtatcaataaccatgacatcacggtgaatgtggacaaacaatttaatatgttcttctttgataaatatgttctcaaaactaaaatccaccattcaag 300  Q
    || ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  20794592 tcggtatcaataaccatgacatcacggtgaatatggacaaacgatttaatatgttcttctttggtgaatatgttctcaaaactaaaatccaccattcaag 20794691  T
Q  301 aaatttttgatccaaaattttttatgttcttctttggtgtgattta 346  Q
    |||||| ||||||||| ||||||||||||||||||| |||||||||    
T  20794692 aaatttctgatccaaatttttttatgttcttctttgatgtgattta 20794737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 90 - 346
Target Start/End: Complemental strand, 40649516 - 40649260
Alignment:
Q  90 ccatacaccatccatttcttacgattgtaagaggttccaaaatgaaaatcaattttcaataattagacatgaaaaaattaaaatctaccattaatgttga 189  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  40649516 ccatacaccatccatttcttacgattgtaacaggttccaaaatgaaaaccaattttcaatatttagacatgaaaaaactaaaatctaccattaatgttga 40649417  T
Q  190 aaaaggttgtttcagtatcaataaccatgacatcacggtgaatgtggacaaacaatttaatatgttcttctttgataaatatgttctcaaaactaaaatc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  40649416 aaaaggttgtttcagtatcaataaccatgacatcacggtgaatatggacaaacgatttaatatgttcttctttggtgaatatgttctcaaaactaaaatc 40649317  T
Q  290 caccattcaagaaatttttgatccaaaattttttatgttcttctttggtgtgattta 346  Q
    ||||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  40649316 caccatttaagaaatttccgatccaaaaatttttatgttcttctttggtgtgattta 40649260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 31390034 - 31389909
Alignment:
Q  97 ccatccatttcttacgattgtaagaggttccaaaatgaaaatcaattttcaataattagacatgaaaaaattaaaatctaccattaatgttgaaaaaggt 196  Q
    |||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||    
T  31390034 ccatccatttcttacgattgcaacagtttc-aaaatgaaaatcaattttcaataattagacatgaaaaaactaaaatccaccattaatattgaaaagggt 31389936  T
Q  197 tgtttcagtatcaataaccatgacatc 223  Q
    |||||| ||| ||||||||||||||||    
T  31389935 tgtttcggtaacaataaccatgacatc 31389909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 38930478 - 38930538
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  38930478 caccaccactaaatcacaaattcaacaaccactttgaccaccattgcaccaccacacacca 38930538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 16270374 - 16270434
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  16270374 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 16270434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 16271031 - 16270971
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  16271031 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 16270971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 38931128 - 38931068
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  38931128 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 38931068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 51975109 - 51975049
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  51975109 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 51975049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 6076750 - 6076690
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| |||||||||||| |||||  ||||||||| ||||||    
T  6076750 caccaccactaaatcacaaattcaacaaccactttgatcaccactgcaccaccacacacca 6076690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 9948784 - 9948725
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| |||||||||||||||||| | |||||||| ||||||    
T  9948784 caccaccactaaatcacaaattcaacaaccactttgaccacca-cacaccaccacacacca 9948725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 48971871 - 48971931
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| |||||||||| |||||||  ||||||||| ||||||    
T  48971871 caccaccactaaatcacaaattcaacaaccactttaaccaccactgcaccaccacacacca 48971931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 51974603 - 51974645
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  51974603 caccaccactaaatcacaaattcaacaaccactttgaccacca 51974645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 48972327 - 48972274
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 92  Q
    |||||||||||||||||| ||||| ||||||  ||||||||||  |||||||||    
T  48972327 caccaccactaaatcacaaattcaacaaccatcttgaccaccactgcaccacca 48972274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 32859348 - 32859678
Alignment:
Q  1 tttacactatcttccaccctctcactatcatgtctccacaccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacaccat 100  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32859348 tttacactatcttccaccctctcactttcatgtccccacaccatcaccaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacaccat 32859447  T
Q  101 ccatttcttacgattgtaagaggttccaaaatgaaaatcaattttcaataattagacatgaaaaaattaaaatctaccattaatgttgaaaaaggttgtt 200  Q
    |||||||||               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32859448 ccatttctt---------------tccaaaatgaaaatcaattttcaataattagacatgaaaaaactaaaatctaccattaatgttgaaaaaggttgtt 32859532  T
Q  201 tcagtatcaataaccatgacatcacggtgaatgtggacaaacaatttaatatgttcttctttgataaatatgttctcaaaactaaaatccaccattcaag 300  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||    
T  32859533 tcagtatcaataaccatgacatcacggtcaatatggacaaacaatttaatatgttcaactttggtgaatatgttctcaaaactaaaatccaccattcaag 32859632  T
Q  301 aaatttttgatccaaaattttttatgttcttctttggtgtgattta 346  Q
    |||||| ||||||||| ||||||||||||||||||| |||||||||    
T  32859633 aaatttctgatccaaatttttttatgttcttctttgatgtgattta 32859678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 668985 - 668925
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  668985 caccaccactaaatcacaaattcaacaaccactttgaccaccattgcaccaccacacacca 668925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 668345 - 668405
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  668345 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 668405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 38072064 - 38072124
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  38072064 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 38072124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 7677583 - 7677643
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||  ||||||||| ||||||    
T  7677583 caccaccactaaatcacaaattcaacaatcactttgaccaccactgcaccaccacacacca 7677643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 4261478 - 4261420
Alignment:
Q  41 ccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||| |||||  || ||||||||||||||  ||||||||| ||||||    
T  4261478 ccaccactaaatcacaaattcaagaatcactttgaccaccactgcaccaccacacacca 4261420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 8440113 - 8439828
Alignment:
Q  63 gcaaccactttgaccaccatcgcaccaccatacaccatccatttcttacgattgtaagaggttccaaaatgaaaatcaattttcaataattagacatgaa 162  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  8440113 gcaaccactttgaccaccatagcaccaccatacaccatccatttcttacgattgtaacaggttccaaaatgaaaaccaatttttaataattagacatgaa 8440014  T
Q  163 aaaattaaaatctaccattaatgttgaaaaaggttgtttcagtatcaataaccatgacatcacggtgaatgtggacaaacaatttaatatgttcttcttt 262  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  8440013 aaaactaaaatctaccattaatgttgaaaaaggttgtttcagtatcaataaccataacatcacggtgaatatggacaaacgatttaatatgttcttcttt 8439914  T
Q  263 gat--aaatatgttctcaaaactaaaatccaccattcaagaaatttttgatccaaaattttttatgttcttctttggtgtgattta 346  Q
    | |  | ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  8439913 ggtgaatatatgttctcaaaactaaaatccaccattcaagaaatttctaatccaaaattttttatgttcttctttggtgtgattta 8439828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 8436568 - 8436283
Alignment:
Q  63 gcaaccactttgaccaccatcgcaccaccatacaccatccatttcttacgattgtaagaggttccaaaatgaaaatcaattttcaataattagacatgaa 162  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  8436568 gcaaccactttgaccaccatagcaccaccatacaccatccatttcttacgattgtaacaggttccaaaatgaaaaccaatttttaataattagacatgaa 8436469  T
Q  163 aaaattaaaatctaccattaatgttgaaaaaggttgtttcagtatcaataaccatgacatcacggtgaatgtggacaaacaatttaatatgttcttcttt 262  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  8436468 aaaactaaaatctaccattaatgttgaaaaaggttgtttcagtatcaataaccataacatcacggtgaatatggacaaacgatttaatatgttcttcttt 8436369  T
Q  263 gat--aaatatgttctcaaaactaaaatccaccattcaagaaatttttgatccaaaattttttatgttcttctttggtgtgattta 346  Q
    | |  | |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  8436368 ggtgaatatatgttctcaaaactaaaatccatcattcaagaaatttataatccaaaattttttatgttcttctttggtgtgattta 8436283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 38923547 - 38923487
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||    
T  38923547 caccaccactaaatcacaaattcagcaaccactttgaccaccactgcaccaccacacacca 38923487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 45500594 - 45500684
Alignment:
Q  7 ctatcttccaccctctcactatcatgtc----tccacaccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccat 93  Q
    ||||||||||||||||| || |||||||     ||||||||||||||||||| | |||||||||||||| |||||||||  ||||||||||    
T  45500594 ctatcttccaccctctctctttcatgtccccacccacaccaccactaaatcatagattcagcaaccactctgaccaccactgcaccaccat 45500684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 38922909 - 38922969
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  38922909 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 38922969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 41756314 - 41756254
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||| |||| ||||||    
T  41756314 caccaccactaaatcacaaattcaacaaccactttgaccaccattgcactaccacacacca 41756254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 44686420 - 44686480
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  44686420 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 44686480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 45242869 - 45242809
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  45242869 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 45242809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 52492052 - 52492112
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  52492052 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 52492112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 45242233 - 45242292
Alignment:
Q  40 accaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    ||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  45242233 accaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 45242292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 3971158 - 3971218
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  3971158 caccaccagtaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 3971218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 3998723 - 3998663
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  3998723 caccaccagtaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 3998663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 36750320 - 36750260
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  36750320 caccaccgctaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 36750260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 45501175 - 45501136
Alignment:
Q  42 caccactaaatcacatattcagcaaccactttgaccacca 81  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  45501175 caccactaaatcatatattcagcaaccactttgaccacca 45501136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 41755665 - 41755707
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  41755665 caccaccactaaatcacaaattcaacaaccactttgaccacca 41755707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 44687045 - 44687003
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  44687045 caccaccactaaatcacaaattcaacaaccactttgaccacca 44687003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 3971786 - 3971745
Alignment:
Q  40 accaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  3971786 accaccactaaatcacaaattcaacaaccactttgaccacca 3971745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 3998092 - 3998133
Alignment:
Q  40 accaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  3998092 accaccactaaatcacaaattcaacaaccactttgaccacca 3998133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 26610512 - 26610572
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  26610512 caccaccactaaatcacaaattcaacaaccactttgaccaccattgcaccaccacacacca 26610572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 10424289 - 10424349
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  10424289 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 10424349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 21165613 - 21165673
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  21165613 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 21165673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 26611165 - 26611105
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  26611165 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 26611105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 29651214 - 29651154
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  29651214 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 29651154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 10424941 - 10424879
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacaccatc 101  Q
    |||||||||||||||| | ||||| ||||||||||||||||||  ||||||||| ||||||||    
T  10424941 caccaccactaaatcataaattcaacaaccactttgaccaccactgcaccaccacacaccatc 10424879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 45235838 - 45235780
Alignment:
Q  43 accactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacaccatc 101  Q
    |||||||||||| | ||||| ||||||||||||||||||| ||||||||| ||||||||    
T  45235838 accactaaatcataaattcaacaaccactttgaccaccattgcaccaccacacaccatc 45235780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 31836341 - 31836288
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 92  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  31836341 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 31836288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 36865600 - 36865540
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  36865600 caccacaactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 36865540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 39522541 - 39522601
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| |||||||||| |||||||  ||||||||| ||||||    
T  39522541 caccaccactaaatcacaaattcaacaaccacttttaccaccactgcaccaccacacacca 39522601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 29650581 - 29650640
Alignment:
Q  40 accaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    ||||||||||||||||| ||||| ||||||||||| ||||||  ||||||||| ||||||    
T  29650581 accaccactaaatcacaaattcaacaaccactttggccaccactgcaccaccacacacca 29650640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 45230532 - 45230573
Alignment:
Q  40 accaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  45230532 accaccactaaatcacaaattcaacaaccactttgaccacca 45230573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 31835314 - 31835368
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccata 94  Q
    |||||| ||||||||||| ||||| |||||||||||||||||| | ||||||||||    
T  31835314 caccactactaaatcacaaattcaacaaccactttgaccacca-cacaccaccata 31835368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 36864981 - 36865024
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccat 82  Q
    |||||||||||||||| | ||||| |||||||||||||||||||    
T  36864981 caccaccactaaatcataaattcaacaaccactttgaccaccat 36865024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 21166257 - 21166215
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||    
T  21166257 caccactactaaatcacaaattcaacaaccactttgaccacca 21166215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 32537370 - 32537310
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  32537370 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 32537310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 32536872 - 32536931
Alignment:
Q  40 accaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    ||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  32536872 accaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 32536931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 37639877 - 37639937
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    ||||||||||||||| || ||||| ||||||||||||||||||  ||||||||| ||||||    
T  37639877 caccaccactaaatcgcaaattcaacaaccactttgaccaccactgcaccaccacacacca 37639937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 38023790 - 38023850
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||| | ||||||    
T  38023790 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacaacacacca 38023850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 38024413 - 38024353
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  38024413 caccaccattaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 38024353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 41859978 - 41859924
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccata 94  Q
    |||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||    
T  41859978 caccaccactaaatcacaaattcaacaaccactttgaccacca-cacaccaccata 41859924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 41859476 - 41859518
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  41859476 caccaccactaaatcacaaattcaacaaccactttgaccacca 41859518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 37640479 - 37640427
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacc 91  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||  ||||||||    
T  37640479 caccaccactaaatcacaaattcaacaaccaccttgaccaccactgcaccacc 37640427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 8383759 - 8383687
Alignment:
Q  121 aggttccaaaatgaaaatcaattttcaataattagacatgaaaaaattaaaatctaccattaatgttgaaaaa 193  Q
    |||||||||||||  |||||||||| |||||||||||||| ||||| ||||||  ||||||||| ||||||||    
T  8383759 aggttccaaaatggcaatcaattttaaataattagacatgtaaaaagtaaaattcaccattaatattgaaaaa 8383687  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 15083200 - 15083140
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  15083200 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 15083140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 22580706 - 22580646
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  22580706 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 22580646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 22587192 - 22587132
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  22587192 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 22587132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 33479863 - 33479923
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  33479863 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 33479923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 22580101 - 22580163
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacaccatc 101  Q
    |||||||||||||||||| ||||| |||| |||||||||||||  ||||||||| ||||||||    
T  22580101 caccaccactaaatcacaaattcaacaactactttgaccaccactgcaccaccacacaccatc 22580163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 1034970 - 1035030
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||| | ||||||||| |||||| ||||||| |||||||||| ||||||    
T  1034970 caccaccactaaatcatagattcagcaatcacttttaccaccaccgcaccaccacacacca 1035030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 15082564 - 15082623
Alignment:
Q  40 accaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    ||||||||||||||||| ||||| |||| |||||||||||||  ||||||||| ||||||    
T  15082564 accaccactaaatcacaaattcaacaactactttgaccaccactgcaccaccacacacca 15082623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 33480510 - 33480468
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  33480510 caccaccactaaatcacaaattcaacaaccactttgaccacca 33480468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 9427918 - 9427876
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||| | |||||||||||||||| |||||||    
T  9427918 caccaccactaaatcatagattcagcaaccacttttaccacca 9427876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 33002698 - 33002638
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  33002698 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 33002638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 15183255 - 15183315
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| |||||| |||||||||||  ||||||||| ||||||    
T  15183255 caccaccactaaatcacaaattcaacaaccattttgaccaccactgcaccaccacacacca 15183315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 686582 - 686624
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  686582 caccaccactaaatcacaaattcaacaaccactttgaccacca 686624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 687230 - 687188
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  687230 caccaccactaaatcacaaattcaacaaccactttgaccacca 687188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 15183899 - 15183857
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  15183899 caccaccactaaatcacaaattcaacaaccactttgaccacca 15183857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 21471183 - 21471243
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacacca 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||    
T  21471183 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacacca 21471243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 37548166 - 37548208
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccacca 81  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  37548166 caccaccactaaatcacaaattcaacaaccactttgaccacca 37548208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 21471836 - 21471783
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 92  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||  |||||||||    
T  21471836 caccaccaccaaatcacaaattcaacaaccactttgaccaccactgcaccacca 21471783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 27495 - 27437
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccatacac 97  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| ||||    
T  27495 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccaccacacac 27437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 41 - 1
Alignment:
Q  39 caccaccactaaatcacatattcagcaaccactttgaccac 79  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  41 caccaccactaaatcacaaattcaacaaccactttgaccac 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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